Protein–RNA interactions for Protein: P55854

SUMO3, Small ubiquitin-related modifier 3, humanhuman

Predicted RBP Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUMO3P55854 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SUMO3P55854 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SUMO3P55854 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SUMO3P55854 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
SUMO3P55854 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
SUMO3P55854 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC16.22■□□□□ 0.19
SUMO3P55854 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
SUMO3P55854 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SUMO3P55854 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SUMO3P55854 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC16.22■□□□□ 0.19
SUMO3P55854 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC16.22■□□□□ 0.19
SUMO3P55854 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
SUMO3P55854 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SUMO3P55854 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SUMO3P55854 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SUMO3P55854 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SUMO3P55854 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SUMO3P55854 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC16.21■□□□□ 0.19
SUMO3P55854 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SUMO3P55854 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SUMO3P55854 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC16.21■□□□□ 0.19
SUMO3P55854 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
SUMO3P55854 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC16.21■□□□□ 0.19
SUMO3P55854 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC16.21■□□□□ 0.19
SUMO3P55854 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SUMO3P55854 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC16.21■□□□□ 0.19
SUMO3P55854 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SUMO3P55854 AL845331.1-201ENST00000424978 1190 ntBASIC16.21■□□□□ 0.19
SUMO3P55854 CIB2-208ENST00000560618 804 ntTSL 2 BASIC16.21■□□□□ 0.19
SUMO3P55854 TPSP2-201ENST00000561760 610 ntBASIC16.21■□□□□ 0.19
SUMO3P55854 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SUMO3P55854 AP002414.4-201ENST00000589764 1148 ntBASIC16.21■□□□□ 0.19
SUMO3P55854 BCL10-202ENST00000620248 774 ntTSL 5 BASIC16.21■□□□□ 0.19
SUMO3P55854 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC16.21■□□□□ 0.19
SUMO3P55854 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SUMO3P55854 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC16.21■□□□□ 0.19
SUMO3P55854 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC16.21■□□□□ 0.19
SUMO3P55854 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.18
SUMO3P55854 RNF165-205ENST00000588679 2904 ntBASIC16.21■□□□□ 0.18
SUMO3P55854 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
SUMO3P55854 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC16.21■□□□□ 0.18
SUMO3P55854 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SUMO3P55854 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC16.2■□□□□ 0.18
SUMO3P55854 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC16.2■□□□□ 0.18
SUMO3P55854 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SUMO3P55854 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SUMO3P55854 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SUMO3P55854 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC16.2■□□□□ 0.18
SUMO3P55854 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
SUMO3P55854 AC009949.1-201ENST00000623048 1830 ntBASIC16.2■□□□□ 0.18
SUMO3P55854 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
SUMO3P55854 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SUMO3P55854 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
SUMO3P55854 PPIH-202ENST00000372549 327 ntTSL 3 BASIC16.2■□□□□ 0.18
SUMO3P55854 DANCR-204ENST00000444958 709 ntTSL 3 BASIC16.2■□□□□ 0.18
SUMO3P55854 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC16.2■□□□□ 0.18
SUMO3P55854 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SUMO3P55854 ABR-204ENST00000543210 1049 ntTSL 2 BASIC16.2■□□□□ 0.18
SUMO3P55854 ABR-217ENST00000572441 563 ntTSL 4 BASIC16.2■□□□□ 0.18
SUMO3P55854 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
SUMO3P55854 NPAP1P7-201ENST00000613027 823 ntBASIC16.2■□□□□ 0.18
SUMO3P55854 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SUMO3P55854 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC16.2■□□□□ 0.18
SUMO3P55854 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
SUMO3P55854 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SUMO3P55854 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
SUMO3P55854 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SUMO3P55854 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
SUMO3P55854 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SUMO3P55854 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SUMO3P55854 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SUMO3P55854 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC16.19■□□□□ 0.18
SUMO3P55854 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SUMO3P55854 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SUMO3P55854 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SUMO3P55854 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
SUMO3P55854 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
SUMO3P55854 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SUMO3P55854 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
SUMO3P55854 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
SUMO3P55854 AC233702.3-201ENST00000578656 1387 ntBASIC16.19■□□□□ 0.18
SUMO3P55854 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SUMO3P55854 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SUMO3P55854 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SUMO3P55854 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC16.19■□□□□ 0.18
SUMO3P55854 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC16.19■□□□□ 0.18
SUMO3P55854 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
SUMO3P55854 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC16.19■□□□□ 0.18
SUMO3P55854 IL11-204ENST00000590625 1028 ntTSL 2 BASIC16.19■□□□□ 0.18
SUMO3P55854 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SUMO3P55854 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC16.19■□□□□ 0.18
SUMO3P55854 AL138831.2-201ENST00000606564 490 ntBASIC16.19■□□□□ 0.18
SUMO3P55854 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SUMO3P55854 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
SUMO3P55854 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC16.19■□□□□ 0.18
SUMO3P55854 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC16.19■□□□□ 0.18
SUMO3P55854 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SUMO3P55854 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC16.19■□□□□ 0.18
SUMO3P55854 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC16.19■□□□□ 0.18
SUMO3P55854 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms