Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC18.66■□□□□ 0.58
EPHB3P54753 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC18.65■□□□□ 0.58
EPHB3P54753 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
EPHB3P54753 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
EPHB3P54753 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
EPHB3P54753 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
EPHB3P54753 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
EPHB3P54753 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
EPHB3P54753 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
EPHB3P54753 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
EPHB3P54753 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
EPHB3P54753 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC18.65■□□□□ 0.58
EPHB3P54753 PON3-205ENST00000451904 1053 ntTSL 3 BASIC18.65■□□□□ 0.58
EPHB3P54753 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC18.65■□□□□ 0.58
EPHB3P54753 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC18.65■□□□□ 0.58
EPHB3P54753 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC18.65■□□□□ 0.58
EPHB3P54753 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
EPHB3P54753 RPL18-209ENST00000550645 463 ntTSL 5 BASIC18.65■□□□□ 0.58
EPHB3P54753 RPL18-214ENST00000552588 559 ntTSL 3 BASIC18.65■□□□□ 0.58
EPHB3P54753 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC18.65■□□□□ 0.58
EPHB3P54753 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
EPHB3P54753 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC18.65■□□□□ 0.58
EPHB3P54753 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC18.65■□□□□ 0.58
EPHB3P54753 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
EPHB3P54753 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
EPHB3P54753 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
EPHB3P54753 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.58
EPHB3P54753 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC18.64■□□□□ 0.58
EPHB3P54753 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.58
EPHB3P54753 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC18.64■□□□□ 0.58
EPHB3P54753 PMPCAP1-201ENST00000508114 1576 ntBASIC18.64■□□□□ 0.58
EPHB3P54753 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
EPHB3P54753 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
EPHB3P54753 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
EPHB3P54753 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
EPHB3P54753 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
EPHB3P54753 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
EPHB3P54753 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
EPHB3P54753 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC18.64■□□□□ 0.57
EPHB3P54753 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
EPHB3P54753 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC18.64■□□□□ 0.57
EPHB3P54753 COX5BP2-201ENST00000392354 334 ntBASIC18.64■□□□□ 0.57
EPHB3P54753 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
EPHB3P54753 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
EPHB3P54753 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
EPHB3P54753 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
EPHB3P54753 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC18.64■□□□□ 0.57
EPHB3P54753 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
EPHB3P54753 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
EPHB3P54753 GPALPP1-207ENST00000611650 899 ntBASIC18.64■□□□□ 0.57
EPHB3P54753 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
EPHB3P54753 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC18.64■□□□□ 0.57
EPHB3P54753 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
EPHB3P54753 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
EPHB3P54753 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC18.64■□□□□ 0.57
EPHB3P54753 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
EPHB3P54753 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
EPHB3P54753 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
EPHB3P54753 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC18.64■□□□□ 0.57
EPHB3P54753 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
EPHB3P54753 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
EPHB3P54753 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC18.64■□□□□ 0.57
EPHB3P54753 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC18.64■□□□□ 0.57
EPHB3P54753 AC079776.2-201ENST00000641154 1609 ntBASIC18.63■□□□□ 0.57
EPHB3P54753 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
EPHB3P54753 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
EPHB3P54753 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
EPHB3P54753 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
EPHB3P54753 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
EPHB3P54753 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
EPHB3P54753 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
EPHB3P54753 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
EPHB3P54753 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
EPHB3P54753 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC18.63■□□□□ 0.57
EPHB3P54753 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC18.63■□□□□ 0.57
EPHB3P54753 AC092910.1-201ENST00000482027 1129 ntBASIC18.63■□□□□ 0.57
EPHB3P54753 AD001527.2-201ENST00000622994 785 ntBASIC18.63■□□□□ 0.57
EPHB3P54753 AC008735.5-201ENST00000623544 497 ntBASIC18.63■□□□□ 0.57
EPHB3P54753 CAND2-206ENST00000626378 333 ntTSL 5 BASIC18.63■□□□□ 0.57
EPHB3P54753 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC18.63■□□□□ 0.57
EPHB3P54753 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
EPHB3P54753 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC18.63■□□□□ 0.57
EPHB3P54753 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
EPHB3P54753 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC18.63■□□□□ 0.57
EPHB3P54753 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC18.63■□□□□ 0.57
EPHB3P54753 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
EPHB3P54753 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
EPHB3P54753 BX323043.1-201ENST00000641006 1765 ntBASIC18.63■□□□□ 0.57
EPHB3P54753 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC18.63■□□□□ 0.57
EPHB3P54753 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
EPHB3P54753 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
EPHB3P54753 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
EPHB3P54753 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC18.62■□□□□ 0.57
EPHB3P54753 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
EPHB3P54753 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
EPHB3P54753 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC18.62■□□□□ 0.57
EPHB3P54753 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
EPHB3P54753 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
EPHB3P54753 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
EPHB3P54753 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms