Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PTPN9P43378 AC097374.2-201ENST00000618617 1306 ntBASIC18.61■□□□□ 0.57
PTPN9P43378 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC18.61■□□□□ 0.57
PTPN9P43378 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PTPN9P43378 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
PTPN9P43378 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
PTPN9P43378 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PTPN9P43378 COPS8-203ENST00000409334 794 ntTSL 5 BASIC18.61■□□□□ 0.57
PTPN9P43378 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC18.61■□□□□ 0.57
PTPN9P43378 RNF146-204ENST00000476956 884 ntTSL 2 BASIC18.61■□□□□ 0.57
PTPN9P43378 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
PTPN9P43378 AC091076.1-201ENST00000610741 619 ntBASIC18.61■□□□□ 0.57
PTPN9P43378 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC18.61■□□□□ 0.57
PTPN9P43378 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PTPN9P43378 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PTPN9P43378 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC18.61■□□□□ 0.57
PTPN9P43378 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
PTPN9P43378 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC18.6■□□□□ 0.57
PTPN9P43378 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
PTPN9P43378 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PTPN9P43378 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
PTPN9P43378 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
PTPN9P43378 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC18.6■□□□□ 0.57
PTPN9P43378 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PTPN9P43378 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
PTPN9P43378 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
PTPN9P43378 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
PTPN9P43378 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PTPN9P43378 AC246785.2-201ENST00000432512 513 ntBASIC18.6■□□□□ 0.57
PTPN9P43378 TSSC2-201ENST00000450217 709 ntBASIC18.6■□□□□ 0.57
PTPN9P43378 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
PTPN9P43378 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC18.6■□□□□ 0.57
PTPN9P43378 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PTPN9P43378 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
PTPN9P43378 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
PTPN9P43378 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC18.6■□□□□ 0.57
PTPN9P43378 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
PTPN9P43378 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC18.6■□□□□ 0.57
PTPN9P43378 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC18.6■□□□□ 0.57
PTPN9P43378 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC18.6■□□□□ 0.57
PTPN9P43378 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PTPN9P43378 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PTPN9P43378 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PTPN9P43378 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PTPN9P43378 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC18.59■□□□□ 0.57
PTPN9P43378 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
PTPN9P43378 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PTPN9P43378 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
PTPN9P43378 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PTPN9P43378 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
PTPN9P43378 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PTPN9P43378 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
PTPN9P43378 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC18.59■□□□□ 0.57
PTPN9P43378 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PTPN9P43378 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PTPN9P43378 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
PTPN9P43378 NT5C-211ENST00000582170 653 ntTSL 3 BASIC18.59■□□□□ 0.57
PTPN9P43378 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC18.59■□□□□ 0.57
PTPN9P43378 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PTPN9P43378 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
PTPN9P43378 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PTPN9P43378 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
PTPN9P43378 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PTPN9P43378 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PTPN9P43378 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC18.59■□□□□ 0.57
PTPN9P43378 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PTPN9P43378 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC18.59■□□□□ 0.57
PTPN9P43378 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PTPN9P43378 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
PTPN9P43378 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.57
PTPN9P43378 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
PTPN9P43378 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
PTPN9P43378 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
PTPN9P43378 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
PTPN9P43378 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC18.58■□□□□ 0.57
PTPN9P43378 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC18.58■□□□□ 0.57
PTPN9P43378 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC18.58■□□□□ 0.57
PTPN9P43378 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC18.58■□□□□ 0.57
PTPN9P43378 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
PTPN9P43378 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
PTPN9P43378 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC18.58■□□□□ 0.57
PTPN9P43378 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
PTPN9P43378 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC18.58■□□□□ 0.56
PTPN9P43378 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
PTPN9P43378 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC18.58■□□□□ 0.56
PTPN9P43378 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC18.58■□□□□ 0.56
PTPN9P43378 AC011840.4-201ENST00000578471 627 ntBASIC18.58■□□□□ 0.56
PTPN9P43378 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
PTPN9P43378 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC18.58■□□□□ 0.56
PTPN9P43378 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
PTPN9P43378 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC18.58■□□□□ 0.56
PTPN9P43378 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
PTPN9P43378 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC18.58■□□□□ 0.56
PTPN9P43378 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
PTPN9P43378 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
PTPN9P43378 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
PTPN9P43378 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC18.58■□□□□ 0.56
PTPN9P43378 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC18.57■□□□□ 0.56
PTPN9P43378 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
PTPN9P43378 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms