Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HOXA9P31269 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HOXA9P31269 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
HOXA9P31269 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
HOXA9P31269 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC18.57■□□□□ 0.56
HOXA9P31269 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC18.57■□□□□ 0.56
HOXA9P31269 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HOXA9P31269 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC18.57■□□□□ 0.56
HOXA9P31269 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC18.57■□□□□ 0.56
HOXA9P31269 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
HOXA9P31269 AL020989.1-201ENST00000422979 469 ntBASIC18.57■□□□□ 0.56
HOXA9P31269 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
HOXA9P31269 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC18.57■□□□□ 0.56
HOXA9P31269 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC18.57■□□□□ 0.56
HOXA9P31269 MIR3687-2-201ENST00000577708 61 ntBASIC18.57■□□□□ 0.56
HOXA9P31269 AL139424.1-201ENST00000607572 797 ntBASIC18.57■□□□□ 0.56
HOXA9P31269 MIR3687-1-201ENST00000614492 61 ntBASIC18.57■□□□□ 0.56
HOXA9P31269 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC18.57■□□□□ 0.56
HOXA9P31269 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC18.57■□□□□ 0.56
HOXA9P31269 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HOXA9P31269 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
HOXA9P31269 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC18.57■□□□□ 0.56
HOXA9P31269 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
HOXA9P31269 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
HOXA9P31269 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HOXA9P31269 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC18.56■□□□□ 0.56
HOXA9P31269 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC18.56■□□□□ 0.56
HOXA9P31269 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
HOXA9P31269 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
HOXA9P31269 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
HOXA9P31269 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC18.56■□□□□ 0.56
HOXA9P31269 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
HOXA9P31269 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HOXA9P31269 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HOXA9P31269 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC18.56■□□□□ 0.56
HOXA9P31269 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC18.56■□□□□ 0.56
HOXA9P31269 SLC4A1APP2-201ENST00000424054 1259 ntBASIC18.56■□□□□ 0.56
HOXA9P31269 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC18.56■□□□□ 0.56
HOXA9P31269 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC18.56■□□□□ 0.56
HOXA9P31269 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
HOXA9P31269 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC18.56■□□□□ 0.56
HOXA9P31269 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
HOXA9P31269 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC18.56■□□□□ 0.56
HOXA9P31269 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC18.56■□□□□ 0.56
HOXA9P31269 AC010327.4-202ENST00000591484 748 ntBASIC18.56■□□□□ 0.56
HOXA9P31269 AC055717.3-201ENST00000622967 595 ntBASIC18.56■□□□□ 0.56
HOXA9P31269 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC18.56■□□□□ 0.56
HOXA9P31269 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
HOXA9P31269 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
HOXA9P31269 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
HOXA9P31269 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
HOXA9P31269 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
HOXA9P31269 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HOXA9P31269 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
HOXA9P31269 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
HOXA9P31269 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HOXA9P31269 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
HOXA9P31269 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC18.55■□□□□ 0.56
HOXA9P31269 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HOXA9P31269 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
HOXA9P31269 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HOXA9P31269 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
HOXA9P31269 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HOXA9P31269 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC18.55■□□□□ 0.56
HOXA9P31269 HNRNPA1P28-201ENST00000424481 961 ntBASIC18.55■□□□□ 0.56
HOXA9P31269 AC007967.2-201ENST00000432613 625 ntBASIC18.55■□□□□ 0.56
HOXA9P31269 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC18.55■□□□□ 0.56
HOXA9P31269 FIS1-203ENST00000442303 631 ntTSL 3 BASIC18.55■□□□□ 0.56
HOXA9P31269 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC18.55■□□□□ 0.56
HOXA9P31269 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
HOXA9P31269 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC18.55■□□□□ 0.56
HOXA9P31269 AC108751.1-201ENST00000490852 363 ntBASIC18.55■□□□□ 0.56
HOXA9P31269 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC18.55■□□□□ 0.56
HOXA9P31269 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
HOXA9P31269 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC18.55■□□□□ 0.56
HOXA9P31269 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
HOXA9P31269 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC18.55■□□□□ 0.56
HOXA9P31269 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC18.55■□□□□ 0.56
HOXA9P31269 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HOXA9P31269 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HOXA9P31269 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC18.55■□□□□ 0.56
HOXA9P31269 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
HOXA9P31269 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
HOXA9P31269 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
HOXA9P31269 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
HOXA9P31269 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
HOXA9P31269 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
HOXA9P31269 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC18.54■□□□□ 0.56
HOXA9P31269 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC18.54■□□□□ 0.56
HOXA9P31269 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC18.54■□□□□ 0.56
HOXA9P31269 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC18.54■□□□□ 0.56
HOXA9P31269 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC18.54■□□□□ 0.56
HOXA9P31269 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC18.54■□□□□ 0.56
HOXA9P31269 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC18.54■□□□□ 0.56
HOXA9P31269 AC004706.3-202ENST00000621574 984 ntBASIC18.54■□□□□ 0.56
HOXA9P31269 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC18.54■□□□□ 0.56
HOXA9P31269 AC079781.4-201ENST00000641908 219 ntBASIC18.54■□□□□ 0.56
HOXA9P31269 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
HOXA9P31269 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
HOXA9P31269 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms