Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
HMGB1P09429 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC21.13■□□□□ 0.97
HMGB1P09429 AL121956.5-201ENST00000625261 221 ntBASIC21.13■□□□□ 0.97
HMGB1P09429 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC21.13■□□□□ 0.97
HMGB1P09429 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
HMGB1P09429 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC21.13■□□□□ 0.97
HMGB1P09429 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
HMGB1P09429 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
HMGB1P09429 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
HMGB1P09429 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC21.13■□□□□ 0.97
HMGB1P09429 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
HMGB1P09429 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC21.13■□□□□ 0.97
HMGB1P09429 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
HMGB1P09429 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
HMGB1P09429 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
HMGB1P09429 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
HMGB1P09429 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
HMGB1P09429 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC21.12■□□□□ 0.97
HMGB1P09429 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC21.12■□□□□ 0.97
HMGB1P09429 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC21.12■□□□□ 0.97
HMGB1P09429 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC21.12■□□□□ 0.97
HMGB1P09429 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
HMGB1P09429 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
HMGB1P09429 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
HMGB1P09429 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
HMGB1P09429 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
HMGB1P09429 AL031133.1-201ENST00000406807 723 ntBASIC21.12■□□□□ 0.97
HMGB1P09429 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC21.12■□□□□ 0.97
HMGB1P09429 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC21.12■□□□□ 0.97
HMGB1P09429 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC21.12■□□□□ 0.97
HMGB1P09429 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC21.12■□□□□ 0.97
HMGB1P09429 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
HMGB1P09429 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC21.12■□□□□ 0.97
HMGB1P09429 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
HMGB1P09429 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
HMGB1P09429 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
HMGB1P09429 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
HMGB1P09429 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
HMGB1P09429 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
HMGB1P09429 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
HMGB1P09429 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
HMGB1P09429 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
HMGB1P09429 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
HMGB1P09429 UBC-206ENST00000538617 1303 ntTSL 5 BASIC21.11■□□□□ 0.97
HMGB1P09429 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
HMGB1P09429 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
HMGB1P09429 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
HMGB1P09429 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
HMGB1P09429 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
HMGB1P09429 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC21.11■□□□□ 0.97
HMGB1P09429 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC21.11■□□□□ 0.97
HMGB1P09429 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC21.11■□□□□ 0.97
HMGB1P09429 GUSBP12-201ENST00000513727 720 ntBASIC21.11■□□□□ 0.97
HMGB1P09429 AC011498.5-201ENST00000592027 486 ntBASIC21.11■□□□□ 0.97
HMGB1P09429 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC21.11■□□□□ 0.97
HMGB1P09429 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC21.11■□□□□ 0.97
HMGB1P09429 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
HMGB1P09429 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC21.11■□□□□ 0.97
HMGB1P09429 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
HMGB1P09429 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
HMGB1P09429 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
HMGB1P09429 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
HMGB1P09429 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
HMGB1P09429 AC026471.1-201ENST00000564629 3026 ntBASIC21.1■□□□□ 0.97
HMGB1P09429 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
HMGB1P09429 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC21.1■□□□□ 0.97
HMGB1P09429 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
HMGB1P09429 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
HMGB1P09429 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC21.1■□□□□ 0.97
HMGB1P09429 AC133963.1-201ENST00000504166 1679 ntBASIC21.1■□□□□ 0.97
HMGB1P09429 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
HMGB1P09429 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
HMGB1P09429 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
HMGB1P09429 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
HMGB1P09429 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
HMGB1P09429 TSPY22P-201ENST00000427496 604 ntBASIC21.1■□□□□ 0.97
HMGB1P09429 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
HMGB1P09429 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
HMGB1P09429 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC21.1■□□□□ 0.97
HMGB1P09429 LINC01451-201ENST00000623792 534 ntBASIC21.1■□□□□ 0.97
HMGB1P09429 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC21.1■□□□□ 0.97
HMGB1P09429 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC21.1■□□□□ 0.97
HMGB1P09429 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
HMGB1P09429 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
HMGB1P09429 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
HMGB1P09429 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
HMGB1P09429 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
HMGB1P09429 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
HMGB1P09429 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
HMGB1P09429 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
HMGB1P09429 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
HMGB1P09429 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC21.09■□□□□ 0.97
HMGB1P09429 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
HMGB1P09429 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
HMGB1P09429 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
HMGB1P09429 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
HMGB1P09429 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
HMGB1P09429 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC21.09■□□□□ 0.97
HMGB1P09429 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC21.09■□□□□ 0.97
HMGB1P09429 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC21.09■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms