Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SDC3O75056 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC17.47■□□□□ 0.39
SDC3O75056 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
SDC3O75056 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
SDC3O75056 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SDC3O75056 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC17.47■□□□□ 0.39
SDC3O75056 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC17.47■□□□□ 0.39
SDC3O75056 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SDC3O75056 SOD2-201ENST00000337404 991 ntTSL 2 BASIC17.47■□□□□ 0.39
SDC3O75056 CENPM-204ENST00000402420 688 ntTSL 5 BASIC17.47■□□□□ 0.39
SDC3O75056 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC17.47■□□□□ 0.39
SDC3O75056 MED15P5-201ENST00000423150 992 ntBASIC17.47■□□□□ 0.39
SDC3O75056 BX005266.1-201ENST00000473402 457 ntBASIC17.47■□□□□ 0.39
SDC3O75056 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC17.47■□□□□ 0.39
SDC3O75056 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
SDC3O75056 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
SDC3O75056 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC17.47■□□□□ 0.39
SDC3O75056 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC17.47■□□□□ 0.39
SDC3O75056 AC140113.2-201ENST00000604370 208 ntBASIC17.47■□□□□ 0.39
SDC3O75056 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC17.47■□□□□ 0.39
SDC3O75056 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
SDC3O75056 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SDC3O75056 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SDC3O75056 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SDC3O75056 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SDC3O75056 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SDC3O75056 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
SDC3O75056 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC17.47■□□□□ 0.39
SDC3O75056 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC17.47■□□□□ 0.39
SDC3O75056 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
SDC3O75056 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SDC3O75056 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SDC3O75056 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
SDC3O75056 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC17.47■□□□□ 0.39
SDC3O75056 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
SDC3O75056 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
SDC3O75056 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
SDC3O75056 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC17.47■□□□□ 0.39
SDC3O75056 TBC1D3P5-201ENST00000579401 1545 ntBASIC17.47■□□□□ 0.39
SDC3O75056 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SDC3O75056 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SDC3O75056 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SDC3O75056 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
SDC3O75056 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SDC3O75056 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SDC3O75056 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SDC3O75056 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SDC3O75056 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
SDC3O75056 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SDC3O75056 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC17.46■□□□□ 0.39
SDC3O75056 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC17.46■□□□□ 0.39
SDC3O75056 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SDC3O75056 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
SDC3O75056 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
SDC3O75056 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC17.46■□□□□ 0.39
SDC3O75056 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC17.46■□□□□ 0.39
SDC3O75056 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SDC3O75056 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC17.46■□□□□ 0.39
SDC3O75056 AL356488.2-201ENST00000602755 427 ntBASIC17.46■□□□□ 0.39
SDC3O75056 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
SDC3O75056 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC17.46■□□□□ 0.39
SDC3O75056 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC17.46■□□□□ 0.39
SDC3O75056 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC17.46■□□□□ 0.39
SDC3O75056 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SDC3O75056 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SDC3O75056 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
SDC3O75056 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC17.46■□□□□ 0.39
SDC3O75056 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SDC3O75056 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
SDC3O75056 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC17.46■□□□□ 0.38
SDC3O75056 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
SDC3O75056 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
SDC3O75056 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
SDC3O75056 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
SDC3O75056 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SDC3O75056 AP002414.3-201ENST00000589352 1468 ntBASIC17.45■□□□□ 0.38
SDC3O75056 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SDC3O75056 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SDC3O75056 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SDC3O75056 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
SDC3O75056 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SDC3O75056 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SDC3O75056 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SDC3O75056 INIP-202ENST00000374236 874 ntTSL 2 BASIC17.45■□□□□ 0.38
SDC3O75056 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SDC3O75056 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SDC3O75056 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
SDC3O75056 CTNS-203ENST00000399306 803 ntTSL 3 BASIC17.45■□□□□ 0.38
SDC3O75056 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC17.45■□□□□ 0.38
SDC3O75056 COX10-202ENST00000429152 875 ntTSL 2 BASIC17.45■□□□□ 0.38
SDC3O75056 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC17.45■□□□□ 0.38
SDC3O75056 SRP19-202ENST00000445150 833 ntTSL 2 BASIC17.45■□□□□ 0.38
SDC3O75056 RNA5SP415-201ENST00000517246 115 ntBASIC17.45■□□□□ 0.38
SDC3O75056 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC17.45■□□□□ 0.38
SDC3O75056 CD63-204ENST00000546939 779 ntTSL 3 BASIC17.45■□□□□ 0.38
SDC3O75056 AC145285.3-201ENST00000564603 959 ntBASIC17.45■□□□□ 0.38
SDC3O75056 RNF151-202ENST00000569210 853 ntTSL 2 BASIC17.45■□□□□ 0.38
SDC3O75056 AC027601.4-201ENST00000611259 610 ntBASIC17.45■□□□□ 0.38
SDC3O75056 AC008735.5-201ENST00000623544 497 ntBASIC17.45■□□□□ 0.38
SDC3O75056 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms