Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
USP3Q9Y6I4 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
USP3Q9Y6I4 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC18.72■□□□□ 0.59
USP3Q9Y6I4 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
USP3Q9Y6I4 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
USP3Q9Y6I4 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC18.72■□□□□ 0.59
USP3Q9Y6I4 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
USP3Q9Y6I4 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC18.72■□□□□ 0.59
USP3Q9Y6I4 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
USP3Q9Y6I4 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
USP3Q9Y6I4 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
USP3Q9Y6I4 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
USP3Q9Y6I4 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC18.72■□□□□ 0.59
USP3Q9Y6I4 SLC25A6P5-201ENST00000435663 894 ntBASIC18.72■□□□□ 0.59
USP3Q9Y6I4 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC18.72■□□□□ 0.59
USP3Q9Y6I4 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
USP3Q9Y6I4 AC096582.2-201ENST00000510860 516 ntBASIC18.72■□□□□ 0.59
USP3Q9Y6I4 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC18.72■□□□□ 0.59
USP3Q9Y6I4 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC18.72■□□□□ 0.59
USP3Q9Y6I4 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
USP3Q9Y6I4 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
USP3Q9Y6I4 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC18.72■□□□□ 0.59
USP3Q9Y6I4 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
USP3Q9Y6I4 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
USP3Q9Y6I4 KRT18P55-202ENST00000578578 1546 ntBASIC18.72■□□□□ 0.59
USP3Q9Y6I4 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
USP3Q9Y6I4 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
USP3Q9Y6I4 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
USP3Q9Y6I4 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
USP3Q9Y6I4 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
USP3Q9Y6I4 HLA-DQB1-201ENST00000374943 1656 ntBASIC18.72■□□□□ 0.59
USP3Q9Y6I4 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
USP3Q9Y6I4 INTS4P1-201ENST00000438455 1935 ntBASIC18.72■□□□□ 0.59
USP3Q9Y6I4 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC18.72■□□□□ 0.59
USP3Q9Y6I4 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
USP3Q9Y6I4 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
USP3Q9Y6I4 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
USP3Q9Y6I4 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
USP3Q9Y6I4 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC18.72■□□□□ 0.59
USP3Q9Y6I4 GATB-213ENST00000515812 1893 ntTSL 5 BASIC18.71■□□□□ 0.59
USP3Q9Y6I4 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC18.71■□□□□ 0.59
USP3Q9Y6I4 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
USP3Q9Y6I4 TBC1D3P5-201ENST00000579401 1545 ntBASIC18.71■□□□□ 0.59
USP3Q9Y6I4 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
USP3Q9Y6I4 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
USP3Q9Y6I4 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC18.71■□□□□ 0.59
USP3Q9Y6I4 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
USP3Q9Y6I4 NUS1P2-201ENST00000417358 873 ntBASIC18.71■□□□□ 0.59
USP3Q9Y6I4 AC007967.3-201ENST00000434308 558 ntBASIC18.71■□□□□ 0.59
USP3Q9Y6I4 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC18.71■□□□□ 0.59
USP3Q9Y6I4 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC18.71■□□□□ 0.59
USP3Q9Y6I4 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC18.71■□□□□ 0.59
USP3Q9Y6I4 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC18.71■□□□□ 0.59
USP3Q9Y6I4 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC18.71■□□□□ 0.59
USP3Q9Y6I4 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
USP3Q9Y6I4 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC18.71■□□□□ 0.59
USP3Q9Y6I4 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
USP3Q9Y6I4 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
USP3Q9Y6I4 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC18.71■□□□□ 0.59
USP3Q9Y6I4 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
USP3Q9Y6I4 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
USP3Q9Y6I4 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC18.71■□□□□ 0.59
USP3Q9Y6I4 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC18.71■□□□□ 0.58
USP3Q9Y6I4 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
USP3Q9Y6I4 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC18.7■□□□□ 0.58
USP3Q9Y6I4 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
USP3Q9Y6I4 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC18.7■□□□□ 0.58
USP3Q9Y6I4 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
USP3Q9Y6I4 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
USP3Q9Y6I4 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
USP3Q9Y6I4 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC18.7■□□□□ 0.58
USP3Q9Y6I4 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC18.7■□□□□ 0.58
USP3Q9Y6I4 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC18.7■□□□□ 0.58
USP3Q9Y6I4 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC18.7■□□□□ 0.58
USP3Q9Y6I4 AC010460.3-201ENST00000511359 1579 ntBASIC18.7■□□□□ 0.58
USP3Q9Y6I4 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC18.7■□□□□ 0.58
USP3Q9Y6I4 TPM1-218ENST00000559281 851 ntTSL 5 BASIC18.7■□□□□ 0.58
USP3Q9Y6I4 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC18.7■□□□□ 0.58
USP3Q9Y6I4 AC111152.3-201ENST00000569699 673 ntBASIC18.7■□□□□ 0.58
USP3Q9Y6I4 IFNL4P1-201ENST00000607083 540 ntBASIC18.7■□□□□ 0.58
USP3Q9Y6I4 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
USP3Q9Y6I4 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
USP3Q9Y6I4 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
USP3Q9Y6I4 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
USP3Q9Y6I4 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
USP3Q9Y6I4 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
USP3Q9Y6I4 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC18.69■□□□□ 0.58
USP3Q9Y6I4 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
USP3Q9Y6I4 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC18.69■□□□□ 0.58
USP3Q9Y6I4 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
USP3Q9Y6I4 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
USP3Q9Y6I4 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
USP3Q9Y6I4 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
USP3Q9Y6I4 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
USP3Q9Y6I4 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
USP3Q9Y6I4 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
USP3Q9Y6I4 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC18.69■□□□□ 0.58
USP3Q9Y6I4 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC18.69■□□□□ 0.58
USP3Q9Y6I4 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC18.69■□□□□ 0.58
USP3Q9Y6I4 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms