Protein–RNA interactions for Protein: Q9Y2X8

UBE2D4, Ubiquitin-conjugating enzyme E2 D4, humanhuman

Predictions only

Length 147 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D4Q9Y2X8 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
UBE2D4Q9Y2X8 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
UBE2D4Q9Y2X8 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
UBE2D4Q9Y2X8 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC12.51□□□□□ -0.41
UBE2D4Q9Y2X8 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
UBE2D4Q9Y2X8 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
UBE2D4Q9Y2X8 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
UBE2D4Q9Y2X8 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
UBE2D4Q9Y2X8 AC100803.2-201ENST00000562459 1963 ntBASIC12.51□□□□□ -0.41
UBE2D4Q9Y2X8 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
UBE2D4Q9Y2X8 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
UBE2D4Q9Y2X8 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
UBE2D4Q9Y2X8 FAM197Y1-201ENST00000421178 764 ntBASIC12.51□□□□□ -0.41
UBE2D4Q9Y2X8 AC090192.1-201ENST00000517740 490 ntBASIC12.51□□□□□ -0.41
UBE2D4Q9Y2X8 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC12.51□□□□□ -0.41
UBE2D4Q9Y2X8 KRT18P6-201ENST00000555540 1265 ntBASIC12.51□□□□□ -0.41
UBE2D4Q9Y2X8 CYGB-204ENST00000589342 815 ntTSL 3 BASIC12.51□□□□□ -0.41
UBE2D4Q9Y2X8 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
UBE2D4Q9Y2X8 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC12.51□□□□□ -0.41
UBE2D4Q9Y2X8 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC12.51□□□□□ -0.41
UBE2D4Q9Y2X8 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
UBE2D4Q9Y2X8 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
UBE2D4Q9Y2X8 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC12.51□□□□□ -0.41
UBE2D4Q9Y2X8 SRI-203ENST00000419179 1307 ntTSL 2 BASIC12.51□□□□□ -0.41
UBE2D4Q9Y2X8 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
UBE2D4Q9Y2X8 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC12.51□□□□□ -0.41
UBE2D4Q9Y2X8 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
UBE2D4Q9Y2X8 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
UBE2D4Q9Y2X8 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
UBE2D4Q9Y2X8 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
UBE2D4Q9Y2X8 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
UBE2D4Q9Y2X8 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC12.51□□□□□ -0.41
UBE2D4Q9Y2X8 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC12.51□□□□□ -0.41
UBE2D4Q9Y2X8 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
UBE2D4Q9Y2X8 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
UBE2D4Q9Y2X8 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
UBE2D4Q9Y2X8 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC12.5□□□□□ -0.41
UBE2D4Q9Y2X8 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC12.5□□□□□ -0.41
UBE2D4Q9Y2X8 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC12.5□□□□□ -0.41
UBE2D4Q9Y2X8 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
UBE2D4Q9Y2X8 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC12.5□□□□□ -0.41
UBE2D4Q9Y2X8 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
UBE2D4Q9Y2X8 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
UBE2D4Q9Y2X8 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC12.5□□□□□ -0.41
UBE2D4Q9Y2X8 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
UBE2D4Q9Y2X8 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
UBE2D4Q9Y2X8 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
UBE2D4Q9Y2X8 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
UBE2D4Q9Y2X8 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
UBE2D4Q9Y2X8 AC097488.1-201ENST00000507834 756 ntBASIC12.5□□□□□ -0.41
UBE2D4Q9Y2X8 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC12.5□□□□□ -0.41
UBE2D4Q9Y2X8 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC12.5□□□□□ -0.41
UBE2D4Q9Y2X8 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC12.5□□□□□ -0.41
UBE2D4Q9Y2X8 MIR3180-4-201ENST00000582223 153 ntBASIC12.5□□□□□ -0.41
UBE2D4Q9Y2X8 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC12.5□□□□□ -0.41
UBE2D4Q9Y2X8 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
UBE2D4Q9Y2X8 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC12.5□□□□□ -0.41
UBE2D4Q9Y2X8 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
UBE2D4Q9Y2X8 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
UBE2D4Q9Y2X8 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC12.5□□□□□ -0.41
UBE2D4Q9Y2X8 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
UBE2D4Q9Y2X8 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
UBE2D4Q9Y2X8 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC12.5□□□□□ -0.41
UBE2D4Q9Y2X8 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
UBE2D4Q9Y2X8 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
UBE2D4Q9Y2X8 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
UBE2D4Q9Y2X8 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
UBE2D4Q9Y2X8 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
UBE2D4Q9Y2X8 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
UBE2D4Q9Y2X8 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC12.5□□□□□ -0.41
UBE2D4Q9Y2X8 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
UBE2D4Q9Y2X8 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
UBE2D4Q9Y2X8 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
UBE2D4Q9Y2X8 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
UBE2D4Q9Y2X8 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
UBE2D4Q9Y2X8 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
UBE2D4Q9Y2X8 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
UBE2D4Q9Y2X8 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
UBE2D4Q9Y2X8 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
UBE2D4Q9Y2X8 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
UBE2D4Q9Y2X8 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
UBE2D4Q9Y2X8 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
UBE2D4Q9Y2X8 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
UBE2D4Q9Y2X8 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC12.49□□□□□ -0.41
UBE2D4Q9Y2X8 LINC00304-203ENST00000565008 1864 ntBASIC12.49□□□□□ -0.41
UBE2D4Q9Y2X8 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
UBE2D4Q9Y2X8 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC12.49□□□□□ -0.41
UBE2D4Q9Y2X8 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
UBE2D4Q9Y2X8 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
UBE2D4Q9Y2X8 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC12.49□□□□□ -0.41
UBE2D4Q9Y2X8 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
UBE2D4Q9Y2X8 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
UBE2D4Q9Y2X8 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
UBE2D4Q9Y2X8 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC12.49□□□□□ -0.41
UBE2D4Q9Y2X8 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
UBE2D4Q9Y2X8 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC12.49□□□□□ -0.41
UBE2D4Q9Y2X8 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
UBE2D4Q9Y2X8 AC022898.2-201ENST00000616822 1312 ntBASIC12.49□□□□□ -0.41
UBE2D4Q9Y2X8 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
UBE2D4Q9Y2X8 SAPCD2P4-201ENST00000424595 1171 ntBASIC12.49□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms