Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 AC010460.3-201ENST00000511359 1579 ntBASIC19.27■□□□□ 0.67
CNTN3Q9P232 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CNTN3Q9P232 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CNTN3Q9P232 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CNTN3Q9P232 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
CNTN3Q9P232 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC19.26■□□□□ 0.67
CNTN3Q9P232 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC19.26■□□□□ 0.67
CNTN3Q9P232 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC19.26■□□□□ 0.67
CNTN3Q9P232 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CNTN3Q9P232 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC19.26■□□□□ 0.67
CNTN3Q9P232 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC19.26■□□□□ 0.67
CNTN3Q9P232 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CNTN3Q9P232 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
CNTN3Q9P232 MED16-201ENST00000269814 1199 ntTSL 5 BASIC19.26■□□□□ 0.67
CNTN3Q9P232 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CNTN3Q9P232 FAM220CP-201ENST00000395253 831 ntBASIC19.26■□□□□ 0.67
CNTN3Q9P232 FDX1P1-201ENST00000449115 551 ntBASIC19.26■□□□□ 0.67
CNTN3Q9P232 AC106795.1-205ENST00000512851 1056 ntBASIC19.26■□□□□ 0.67
CNTN3Q9P232 AP002469.2-201ENST00000531724 424 ntBASIC19.26■□□□□ 0.67
CNTN3Q9P232 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC19.26■□□□□ 0.67
CNTN3Q9P232 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CNTN3Q9P232 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC19.26■□□□□ 0.67
CNTN3Q9P232 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC19.26■□□□□ 0.67
CNTN3Q9P232 VPS51-217ENST00000639871 243 ntTSL 5 BASIC19.26■□□□□ 0.67
CNTN3Q9P232 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC19.26■□□□□ 0.67
CNTN3Q9P232 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CNTN3Q9P232 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC19.26■□□□□ 0.67
CNTN3Q9P232 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
CNTN3Q9P232 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CNTN3Q9P232 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
CNTN3Q9P232 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CNTN3Q9P232 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CNTN3Q9P232 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC19.26■□□□□ 0.67
CNTN3Q9P232 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CNTN3Q9P232 KRT8P10-201ENST00000450021 1447 ntBASIC19.25■□□□□ 0.67
CNTN3Q9P232 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CNTN3Q9P232 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CNTN3Q9P232 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CNTN3Q9P232 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CNTN3Q9P232 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
CNTN3Q9P232 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CNTN3Q9P232 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
CNTN3Q9P232 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
CNTN3Q9P232 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC19.25■□□□□ 0.67
CNTN3Q9P232 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC19.25■□□□□ 0.67
CNTN3Q9P232 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CNTN3Q9P232 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CNTN3Q9P232 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CNTN3Q9P232 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
CNTN3Q9P232 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CNTN3Q9P232 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
CNTN3Q9P232 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CNTN3Q9P232 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CNTN3Q9P232 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC19.25■□□□□ 0.67
CNTN3Q9P232 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC19.25■□□□□ 0.67
CNTN3Q9P232 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC19.25■□□□□ 0.67
CNTN3Q9P232 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CNTN3Q9P232 AP001269.4-201ENST00000609611 512 ntBASIC19.25■□□□□ 0.67
CNTN3Q9P232 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC19.25■□□□□ 0.67
CNTN3Q9P232 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CNTN3Q9P232 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
CNTN3Q9P232 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
CNTN3Q9P232 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC19.25■□□□□ 0.67
CNTN3Q9P232 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CNTN3Q9P232 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CNTN3Q9P232 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CNTN3Q9P232 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
CNTN3Q9P232 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CNTN3Q9P232 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
CNTN3Q9P232 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
CNTN3Q9P232 AC100803.2-201ENST00000562459 1963 ntBASIC19.24■□□□□ 0.67
CNTN3Q9P232 AL390961.4-201ENST00000623958 2535 ntBASIC19.24■□□□□ 0.67
CNTN3Q9P232 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CNTN3Q9P232 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CNTN3Q9P232 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CNTN3Q9P232 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
CNTN3Q9P232 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CNTN3Q9P232 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC19.24■□□□□ 0.67
CNTN3Q9P232 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
CNTN3Q9P232 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC19.24■□□□□ 0.67
CNTN3Q9P232 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC19.24■□□□□ 0.67
CNTN3Q9P232 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CNTN3Q9P232 FUOM-202ENST00000368551 628 ntTSL 3 BASIC19.24■□□□□ 0.67
CNTN3Q9P232 CD9-202ENST00000382515 1229 ntTSL 5 BASIC19.24■□□□□ 0.67
CNTN3Q9P232 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC19.24■□□□□ 0.67
CNTN3Q9P232 RBM17P3-201ENST00000417687 1192 ntBASIC19.24■□□□□ 0.67
CNTN3Q9P232 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC19.24■□□□□ 0.67
CNTN3Q9P232 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC19.24■□□□□ 0.67
CNTN3Q9P232 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC19.24■□□□□ 0.67
CNTN3Q9P232 RBSN-204ENST00000449050 903 ntTSL 2 BASIC19.24■□□□□ 0.67
CNTN3Q9P232 AC009078.2-202ENST00000463353 338 ntBASIC19.24■□□□□ 0.67
CNTN3Q9P232 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC19.24■□□□□ 0.67
CNTN3Q9P232 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC19.24■□□□□ 0.67
CNTN3Q9P232 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC19.24■□□□□ 0.67
CNTN3Q9P232 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC19.24■□□□□ 0.67
CNTN3Q9P232 CALM3-211ENST00000598871 561 ntTSL 4 BASIC19.24■□□□□ 0.67
CNTN3Q9P232 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC19.24■□□□□ 0.67
CNTN3Q9P232 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CNTN3Q9P232 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CNTN3Q9P232 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms