Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
VCX3AQ9NNX9 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
VCX3AQ9NNX9 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
VCX3AQ9NNX9 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC16.78■□□□□ 0.28
VCX3AQ9NNX9 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VCX3AQ9NNX9 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC16.78■□□□□ 0.28
VCX3AQ9NNX9 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VCX3AQ9NNX9 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VCX3AQ9NNX9 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VCX3AQ9NNX9 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC16.78■□□□□ 0.28
VCX3AQ9NNX9 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
VCX3AQ9NNX9 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC16.78■□□□□ 0.28
VCX3AQ9NNX9 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
VCX3AQ9NNX9 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
VCX3AQ9NNX9 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC16.78■□□□□ 0.28
VCX3AQ9NNX9 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
VCX3AQ9NNX9 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
VCX3AQ9NNX9 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VCX3AQ9NNX9 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
VCX3AQ9NNX9 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
VCX3AQ9NNX9 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
VCX3AQ9NNX9 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VCX3AQ9NNX9 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC16.78■□□□□ 0.28
VCX3AQ9NNX9 AC004854.2-201ENST00000608450 1441 ntBASIC16.78■□□□□ 0.28
VCX3AQ9NNX9 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VCX3AQ9NNX9 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
VCX3AQ9NNX9 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
VCX3AQ9NNX9 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
VCX3AQ9NNX9 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
VCX3AQ9NNX9 AC132872.4-202ENST00000622924 2756 ntBASIC16.77■□□□□ 0.28
VCX3AQ9NNX9 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC16.77■□□□□ 0.28
VCX3AQ9NNX9 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
VCX3AQ9NNX9 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
VCX3AQ9NNX9 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC16.77■□□□□ 0.28
VCX3AQ9NNX9 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
VCX3AQ9NNX9 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
VCX3AQ9NNX9 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC16.77■□□□□ 0.28
VCX3AQ9NNX9 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
VCX3AQ9NNX9 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
VCX3AQ9NNX9 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
VCX3AQ9NNX9 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
VCX3AQ9NNX9 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
VCX3AQ9NNX9 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
VCX3AQ9NNX9 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
VCX3AQ9NNX9 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC16.77■□□□□ 0.28
VCX3AQ9NNX9 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC16.77■□□□□ 0.28
VCX3AQ9NNX9 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
VCX3AQ9NNX9 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC16.77■□□□□ 0.27
VCX3AQ9NNX9 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
VCX3AQ9NNX9 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
VCX3AQ9NNX9 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
VCX3AQ9NNX9 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
VCX3AQ9NNX9 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.27
VCX3AQ9NNX9 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
VCX3AQ9NNX9 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
VCX3AQ9NNX9 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC16.77■□□□□ 0.27
VCX3AQ9NNX9 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
VCX3AQ9NNX9 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
VCX3AQ9NNX9 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC16.77■□□□□ 0.27
VCX3AQ9NNX9 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
VCX3AQ9NNX9 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
VCX3AQ9NNX9 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VCX3AQ9NNX9 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VCX3AQ9NNX9 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC16.76■□□□□ 0.27
VCX3AQ9NNX9 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VCX3AQ9NNX9 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
VCX3AQ9NNX9 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
VCX3AQ9NNX9 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VCX3AQ9NNX9 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
VCX3AQ9NNX9 NXN-202ENST00000537628 1340 ntTSL 3 BASIC16.76■□□□□ 0.27
VCX3AQ9NNX9 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
VCX3AQ9NNX9 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VCX3AQ9NNX9 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
VCX3AQ9NNX9 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC16.76■□□□□ 0.27
VCX3AQ9NNX9 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
VCX3AQ9NNX9 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
VCX3AQ9NNX9 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VCX3AQ9NNX9 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
VCX3AQ9NNX9 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VCX3AQ9NNX9 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
VCX3AQ9NNX9 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
VCX3AQ9NNX9 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC16.76■□□□□ 0.27
VCX3AQ9NNX9 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC16.76■□□□□ 0.27
VCX3AQ9NNX9 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC16.76■□□□□ 0.27
VCX3AQ9NNX9 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC16.76■□□□□ 0.27
VCX3AQ9NNX9 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC16.76■□□□□ 0.27
VCX3AQ9NNX9 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
VCX3AQ9NNX9 AC106739.1-201ENST00000617035 715 ntBASIC16.76■□□□□ 0.27
VCX3AQ9NNX9 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC16.76■□□□□ 0.27
VCX3AQ9NNX9 AC068587.9-201ENST00000641814 219 ntBASIC16.76■□□□□ 0.27
VCX3AQ9NNX9 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
VCX3AQ9NNX9 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
VCX3AQ9NNX9 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
VCX3AQ9NNX9 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VCX3AQ9NNX9 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
VCX3AQ9NNX9 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
VCX3AQ9NNX9 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
VCX3AQ9NNX9 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC16.76■□□□□ 0.27
VCX3AQ9NNX9 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VCX3AQ9NNX9 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms