Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 RHOQP3-201ENST00000437982 621 ntBASIC23.05■■□□□ 1.28
SHANK3Q9BYB0 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
SHANK3Q9BYB0 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
SHANK3Q9BYB0 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC23.04■■□□□ 1.28
SHANK3Q9BYB0 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC23.04■■□□□ 1.28
SHANK3Q9BYB0 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
SHANK3Q9BYB0 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC23.04■■□□□ 1.28
SHANK3Q9BYB0 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
SHANK3Q9BYB0 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
SHANK3Q9BYB0 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC23.04■■□□□ 1.28
SHANK3Q9BYB0 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC23.04■■□□□ 1.28
SHANK3Q9BYB0 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC23.04■■□□□ 1.28
SHANK3Q9BYB0 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
SHANK3Q9BYB0 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC23.04■■□□□ 1.28
SHANK3Q9BYB0 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC23.04■■□□□ 1.28
SHANK3Q9BYB0 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC23.04■■□□□ 1.28
SHANK3Q9BYB0 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC23.04■■□□□ 1.28
SHANK3Q9BYB0 CITED2-204ENST00000618718 901 ntTSL 2 BASIC23.04■■□□□ 1.28
SHANK3Q9BYB0 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC23.04■■□□□ 1.28
SHANK3Q9BYB0 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC23.04■■□□□ 1.28
SHANK3Q9BYB0 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
SHANK3Q9BYB0 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC23.03■■□□□ 1.28
SHANK3Q9BYB0 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
SHANK3Q9BYB0 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
SHANK3Q9BYB0 CROCCP3-202ENST00000420820 1947 ntBASIC23.03■■□□□ 1.28
SHANK3Q9BYB0 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC23.03■■□□□ 1.28
SHANK3Q9BYB0 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
SHANK3Q9BYB0 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC23.03■■□□□ 1.28
SHANK3Q9BYB0 CBR1-202ENST00000399191 838 ntTSL 3 BASIC23.03■■□□□ 1.28
SHANK3Q9BYB0 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC23.03■■□□□ 1.28
SHANK3Q9BYB0 CD63-210ENST00000550776 870 ntTSL 5 BASIC23.03■■□□□ 1.28
SHANK3Q9BYB0 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
SHANK3Q9BYB0 AC073592.3-201ENST00000625118 1834 ntBASIC23.03■■□□□ 1.28
SHANK3Q9BYB0 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC23.03■■□□□ 1.28
SHANK3Q9BYB0 AC018445.3-201ENST00000624177 1945 ntBASIC23.03■■□□□ 1.28
SHANK3Q9BYB0 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC23.03■■□□□ 1.28
SHANK3Q9BYB0 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
SHANK3Q9BYB0 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC23.02■■□□□ 1.28
SHANK3Q9BYB0 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
SHANK3Q9BYB0 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
SHANK3Q9BYB0 AC009336.1-201ENST00000608941 1553 ntBASIC23.02■■□□□ 1.28
SHANK3Q9BYB0 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC23.02■■□□□ 1.28
SHANK3Q9BYB0 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
SHANK3Q9BYB0 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
SHANK3Q9BYB0 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC23.02■■□□□ 1.28
SHANK3Q9BYB0 NKTR-203ENST00000442970 646 ntTSL 2 BASIC23.02■■□□□ 1.28
SHANK3Q9BYB0 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC23.02■■□□□ 1.28
SHANK3Q9BYB0 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC23.02■■□□□ 1.28
SHANK3Q9BYB0 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC23.02■■□□□ 1.28
SHANK3Q9BYB0 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC23.02■■□□□ 1.28
SHANK3Q9BYB0 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC23.02■■□□□ 1.28
SHANK3Q9BYB0 AC109462.3-201ENST00000573934 613 ntBASIC23.02■■□□□ 1.28
SHANK3Q9BYB0 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC23.02■■□□□ 1.28
SHANK3Q9BYB0 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC23.02■■□□□ 1.28
SHANK3Q9BYB0 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC23.02■■□□□ 1.28
SHANK3Q9BYB0 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC23.02■■□□□ 1.28
SHANK3Q9BYB0 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
SHANK3Q9BYB0 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC23.02■■□□□ 1.28
SHANK3Q9BYB0 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC23.02■■□□□ 1.28
SHANK3Q9BYB0 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
SHANK3Q9BYB0 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC23.02■■□□□ 1.28
SHANK3Q9BYB0 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
SHANK3Q9BYB0 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC23.02■■□□□ 1.28
SHANK3Q9BYB0 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
SHANK3Q9BYB0 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
SHANK3Q9BYB0 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
SHANK3Q9BYB0 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
SHANK3Q9BYB0 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
SHANK3Q9BYB0 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
SHANK3Q9BYB0 AL139400.1-201ENST00000366220 510 ntBASIC23.02■■□□□ 1.28
SHANK3Q9BYB0 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
SHANK3Q9BYB0 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC23.02■■□□□ 1.28
SHANK3Q9BYB0 WDR53-203ENST00000429115 683 ntTSL 2 BASIC23.02■■□□□ 1.28
SHANK3Q9BYB0 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC23.02■■□□□ 1.28
SHANK3Q9BYB0 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
SHANK3Q9BYB0 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC23.02■■□□□ 1.28
SHANK3Q9BYB0 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC23.02■■□□□ 1.28
SHANK3Q9BYB0 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC23.02■■□□□ 1.27
SHANK3Q9BYB0 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
SHANK3Q9BYB0 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
SHANK3Q9BYB0 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC23.01■■□□□ 1.27
SHANK3Q9BYB0 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
SHANK3Q9BYB0 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
SHANK3Q9BYB0 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC23.01■■□□□ 1.27
SHANK3Q9BYB0 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC23.01■■□□□ 1.27
SHANK3Q9BYB0 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC23.01■■□□□ 1.27
SHANK3Q9BYB0 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC23.01■■□□□ 1.27
SHANK3Q9BYB0 COX5BP2-201ENST00000392354 334 ntBASIC23.01■■□□□ 1.27
SHANK3Q9BYB0 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC23.01■■□□□ 1.27
SHANK3Q9BYB0 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC23.01■■□□□ 1.27
SHANK3Q9BYB0 VN2R19P-201ENST00000442399 1052 ntBASIC23.01■■□□□ 1.27
SHANK3Q9BYB0 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC23.01■■□□□ 1.27
SHANK3Q9BYB0 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC23.01■■□□□ 1.27
SHANK3Q9BYB0 AC068137.2-201ENST00000605408 478 ntBASIC23.01■■□□□ 1.27
SHANK3Q9BYB0 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
SHANK3Q9BYB0 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC23.01■■□□□ 1.27
SHANK3Q9BYB0 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
SHANK3Q9BYB0 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
SHANK3Q9BYB0 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
SHANK3Q9BYB0 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC23.01■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 47.4 ms