Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
NKX3-1Q99801 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
NKX3-1Q99801 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC15.68■□□□□ 0.1
NKX3-1Q99801 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC15.68■□□□□ 0.1
NKX3-1Q99801 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC15.68■□□□□ 0.1
NKX3-1Q99801 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC15.68■□□□□ 0.1
NKX3-1Q99801 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
NKX3-1Q99801 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
NKX3-1Q99801 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
NKX3-1Q99801 AL355312.1-201ENST00000407115 2176 ntBASIC15.68■□□□□ 0.1
NKX3-1Q99801 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC15.68■□□□□ 0.1
NKX3-1Q99801 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
NKX3-1Q99801 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
NKX3-1Q99801 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
NKX3-1Q99801 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
NKX3-1Q99801 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
NKX3-1Q99801 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
NKX3-1Q99801 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
NKX3-1Q99801 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC15.68■□□□□ 0.1
NKX3-1Q99801 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
NKX3-1Q99801 GXYLT1P3-201ENST00000453058 1193 ntBASIC15.68■□□□□ 0.1
NKX3-1Q99801 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
NKX3-1Q99801 AC116562.2-201ENST00000507042 360 ntBASIC15.68■□□□□ 0.1
NKX3-1Q99801 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC15.68■□□□□ 0.1
NKX3-1Q99801 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
NKX3-1Q99801 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC15.68■□□□□ 0.1
NKX3-1Q99801 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
NKX3-1Q99801 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
NKX3-1Q99801 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
NKX3-1Q99801 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
NKX3-1Q99801 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC15.68■□□□□ 0.1
NKX3-1Q99801 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
NKX3-1Q99801 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
NKX3-1Q99801 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
NKX3-1Q99801 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC15.68■□□□□ 0.1
NKX3-1Q99801 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
NKX3-1Q99801 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
NKX3-1Q99801 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
NKX3-1Q99801 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
NKX3-1Q99801 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
NKX3-1Q99801 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC15.67■□□□□ 0.1
NKX3-1Q99801 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
NKX3-1Q99801 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
NKX3-1Q99801 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC15.67■□□□□ 0.1
NKX3-1Q99801 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
NKX3-1Q99801 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC15.67■□□□□ 0.1
NKX3-1Q99801 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
NKX3-1Q99801 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC15.67■□□□□ 0.1
NKX3-1Q99801 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
NKX3-1Q99801 SNCG-201ENST00000348795 684 ntTSL 2 BASIC15.67■□□□□ 0.1
NKX3-1Q99801 PRR31-201ENST00000371629 978 ntTSL 2 BASIC15.67■□□□□ 0.1
NKX3-1Q99801 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC15.67■□□□□ 0.1
NKX3-1Q99801 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
NKX3-1Q99801 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
NKX3-1Q99801 KRT18P23-201ENST00000435622 1283 ntBASIC15.67■□□□□ 0.1
NKX3-1Q99801 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC15.67■□□□□ 0.1
NKX3-1Q99801 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC15.67■□□□□ 0.1
NKX3-1Q99801 AC026471.5-201ENST00000615068 467 ntBASIC15.67■□□□□ 0.1
NKX3-1Q99801 DECR2-212ENST00000627716 352 ntTSL 2 BASIC15.67■□□□□ 0.1
NKX3-1Q99801 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC15.67■□□□□ 0.1
NKX3-1Q99801 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
NKX3-1Q99801 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
NKX3-1Q99801 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
NKX3-1Q99801 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
NKX3-1Q99801 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
NKX3-1Q99801 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
NKX3-1Q99801 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
NKX3-1Q99801 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC15.67■□□□□ 0.1
NKX3-1Q99801 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC15.67■□□□□ 0.1
NKX3-1Q99801 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
NKX3-1Q99801 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
NKX3-1Q99801 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
NKX3-1Q99801 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
NKX3-1Q99801 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
NKX3-1Q99801 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
NKX3-1Q99801 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
NKX3-1Q99801 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
NKX3-1Q99801 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC15.66■□□□□ 0.1
NKX3-1Q99801 AC093010.1-201ENST00000473625 1624 ntBASIC15.66■□□□□ 0.1
NKX3-1Q99801 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC15.66■□□□□ 0.1
NKX3-1Q99801 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
NKX3-1Q99801 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
NKX3-1Q99801 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
NKX3-1Q99801 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
NKX3-1Q99801 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
NKX3-1Q99801 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
NKX3-1Q99801 MIR149-201ENST00000384879 89 ntBASIC15.66■□□□□ 0.1
NKX3-1Q99801 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC15.66■□□□□ 0.1
NKX3-1Q99801 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
NKX3-1Q99801 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
NKX3-1Q99801 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC15.66■□□□□ 0.1
NKX3-1Q99801 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC15.66■□□□□ 0.1
NKX3-1Q99801 AC073912.3-201ENST00000624414 853 ntBASIC15.66■□□□□ 0.1
NKX3-1Q99801 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
NKX3-1Q99801 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
NKX3-1Q99801 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
NKX3-1Q99801 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC15.66■□□□□ 0.1
NKX3-1Q99801 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
NKX3-1Q99801 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
NKX3-1Q99801 PRORSD1P-202ENST00000563365 2154 ntBASIC15.66■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms