Protein–RNA interactions for Protein: Q99742

NPAS1, Neuronal PAS domain-containing protein 1, humanhuman

Predictions only

Length 590 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS1Q99742 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
NPAS1Q99742 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC16.35■□□□□ 0.21
NPAS1Q99742 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
NPAS1Q99742 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC16.35■□□□□ 0.21
NPAS1Q99742 AC138028.4-201ENST00000564984 1845 ntBASIC16.35■□□□□ 0.21
NPAS1Q99742 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
NPAS1Q99742 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC16.35■□□□□ 0.21
NPAS1Q99742 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
NPAS1Q99742 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
NPAS1Q99742 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC16.35■□□□□ 0.21
NPAS1Q99742 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
NPAS1Q99742 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC16.35■□□□□ 0.21
NPAS1Q99742 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
NPAS1Q99742 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
NPAS1Q99742 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
NPAS1Q99742 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
NPAS1Q99742 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
NPAS1Q99742 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
NPAS1Q99742 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
NPAS1Q99742 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC16.34■□□□□ 0.21
NPAS1Q99742 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
NPAS1Q99742 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
NPAS1Q99742 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
NPAS1Q99742 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
NPAS1Q99742 AL845331.1-201ENST00000424978 1190 ntBASIC16.34■□□□□ 0.21
NPAS1Q99742 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
NPAS1Q99742 UPK3BP1-201ENST00000428678 509 ntBASIC16.34■□□□□ 0.21
NPAS1Q99742 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
NPAS1Q99742 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC16.34■□□□□ 0.21
NPAS1Q99742 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
NPAS1Q99742 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
NPAS1Q99742 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC16.34■□□□□ 0.21
NPAS1Q99742 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
NPAS1Q99742 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
NPAS1Q99742 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
NPAS1Q99742 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
NPAS1Q99742 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
NPAS1Q99742 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
NPAS1Q99742 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
NPAS1Q99742 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
NPAS1Q99742 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
NPAS1Q99742 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
NPAS1Q99742 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
NPAS1Q99742 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
NPAS1Q99742 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
NPAS1Q99742 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
NPAS1Q99742 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
NPAS1Q99742 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC16.34■□□□□ 0.21
NPAS1Q99742 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
NPAS1Q99742 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
NPAS1Q99742 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
NPAS1Q99742 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
NPAS1Q99742 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.21
NPAS1Q99742 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.21
NPAS1Q99742 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.21
NPAS1Q99742 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
NPAS1Q99742 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
NPAS1Q99742 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
NPAS1Q99742 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC16.33■□□□□ 0.2
NPAS1Q99742 BAALC-202ENST00000306391 243 ntTSL 5 BASIC16.33■□□□□ 0.2
NPAS1Q99742 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
NPAS1Q99742 BAALC-204ENST00000330955 222 ntTSL 5 BASIC16.33■□□□□ 0.2
NPAS1Q99742 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
NPAS1Q99742 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC16.33■□□□□ 0.2
NPAS1Q99742 BX276092.5-203ENST00000456199 560 ntBASIC16.33■□□□□ 0.2
NPAS1Q99742 RN7SL606P-201ENST00000472779 293 ntBASIC16.33■□□□□ 0.2
NPAS1Q99742 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
NPAS1Q99742 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
NPAS1Q99742 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC16.33■□□□□ 0.2
NPAS1Q99742 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC16.33■□□□□ 0.2
NPAS1Q99742 AC093458.2-201ENST00000623150 629 ntBASIC16.33■□□□□ 0.2
NPAS1Q99742 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
NPAS1Q99742 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC16.33■□□□□ 0.2
NPAS1Q99742 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC16.33■□□□□ 0.2
NPAS1Q99742 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
NPAS1Q99742 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
NPAS1Q99742 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
NPAS1Q99742 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC16.33■□□□□ 0.2
NPAS1Q99742 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
NPAS1Q99742 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC16.33■□□□□ 0.2
NPAS1Q99742 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
NPAS1Q99742 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC16.33■□□□□ 0.2
NPAS1Q99742 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
NPAS1Q99742 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
NPAS1Q99742 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
NPAS1Q99742 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
NPAS1Q99742 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC16.32■□□□□ 0.2
NPAS1Q99742 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
NPAS1Q99742 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
NPAS1Q99742 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
NPAS1Q99742 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
NPAS1Q99742 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
NPAS1Q99742 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
NPAS1Q99742 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
NPAS1Q99742 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC16.32■□□□□ 0.2
NPAS1Q99742 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
NPAS1Q99742 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC16.32■□□□□ 0.2
NPAS1Q99742 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC16.32■□□□□ 0.2
NPAS1Q99742 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
NPAS1Q99742 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 63.1 ms