Protein–RNA interactions for Protein: Q96NG5

ZNF558, Zinc finger protein 558, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF558Q96NG5 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
ZNF558Q96NG5 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
ZNF558Q96NG5 MED29-202ENST00000594368 1471 ntTSL 2 BASIC18.98■□□□□ 0.63
ZNF558Q96NG5 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
ZNF558Q96NG5 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC18.98■□□□□ 0.63
ZNF558Q96NG5 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC18.98■□□□□ 0.63
ZNF558Q96NG5 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
ZNF558Q96NG5 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
ZNF558Q96NG5 AC108751.1-201ENST00000490852 363 ntBASIC18.98■□□□□ 0.63
ZNF558Q96NG5 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC18.98■□□□□ 0.63
ZNF558Q96NG5 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC18.98■□□□□ 0.63
ZNF558Q96NG5 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC18.98■□□□□ 0.63
ZNF558Q96NG5 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC18.98■□□□□ 0.63
ZNF558Q96NG5 AC079781.4-201ENST00000641908 219 ntBASIC18.98■□□□□ 0.63
ZNF558Q96NG5 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
ZNF558Q96NG5 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC18.98■□□□□ 0.63
ZNF558Q96NG5 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC18.98■□□□□ 0.63
ZNF558Q96NG5 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
ZNF558Q96NG5 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
ZNF558Q96NG5 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
ZNF558Q96NG5 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
ZNF558Q96NG5 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
ZNF558Q96NG5 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
ZNF558Q96NG5 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
ZNF558Q96NG5 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
ZNF558Q96NG5 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
ZNF558Q96NG5 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
ZNF558Q96NG5 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
ZNF558Q96NG5 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
ZNF558Q96NG5 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
ZNF558Q96NG5 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
ZNF558Q96NG5 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
ZNF558Q96NG5 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC18.97■□□□□ 0.63
ZNF558Q96NG5 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC18.97■□□□□ 0.63
ZNF558Q96NG5 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
ZNF558Q96NG5 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
ZNF558Q96NG5 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC18.97■□□□□ 0.63
ZNF558Q96NG5 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
ZNF558Q96NG5 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
ZNF558Q96NG5 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
ZNF558Q96NG5 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
ZNF558Q96NG5 AC023274.1-201ENST00000418278 595 ntBASIC18.97■□□□□ 0.63
ZNF558Q96NG5 AP001160.2-201ENST00000596071 487 ntBASIC18.97■□□□□ 0.63
ZNF558Q96NG5 AC064836.3-201ENST00000607928 673 ntBASIC18.97■□□□□ 0.63
ZNF558Q96NG5 AL589182.2-201ENST00000619332 1049 ntBASIC18.97■□□□□ 0.63
ZNF558Q96NG5 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC18.97■□□□□ 0.63
ZNF558Q96NG5 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
ZNF558Q96NG5 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC18.97■□□□□ 0.63
ZNF558Q96NG5 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC18.97■□□□□ 0.63
ZNF558Q96NG5 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.63
ZNF558Q96NG5 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
ZNF558Q96NG5 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
ZNF558Q96NG5 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC18.96■□□□□ 0.63
ZNF558Q96NG5 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
ZNF558Q96NG5 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
ZNF558Q96NG5 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
ZNF558Q96NG5 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
ZNF558Q96NG5 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.63
ZNF558Q96NG5 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
ZNF558Q96NG5 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC18.96■□□□□ 0.63
ZNF558Q96NG5 AL020989.1-201ENST00000422979 469 ntBASIC18.96■□□□□ 0.63
ZNF558Q96NG5 RPS8P6-201ENST00000426177 609 ntBASIC18.96■□□□□ 0.63
ZNF558Q96NG5 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC18.96■□□□□ 0.63
ZNF558Q96NG5 AC004967.1-201ENST00000453589 447 ntBASIC18.96■□□□□ 0.63
ZNF558Q96NG5 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
ZNF558Q96NG5 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC18.96■□□□□ 0.63
ZNF558Q96NG5 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC18.96■□□□□ 0.63
ZNF558Q96NG5 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
ZNF558Q96NG5 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
ZNF558Q96NG5 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
ZNF558Q96NG5 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC18.96■□□□□ 0.63
ZNF558Q96NG5 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC18.96■□□□□ 0.63
ZNF558Q96NG5 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
ZNF558Q96NG5 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC18.96■□□□□ 0.63
ZNF558Q96NG5 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
ZNF558Q96NG5 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC18.96■□□□□ 0.63
ZNF558Q96NG5 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.96■□□□□ 0.63
ZNF558Q96NG5 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
ZNF558Q96NG5 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
ZNF558Q96NG5 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
ZNF558Q96NG5 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC18.95■□□□□ 0.62
ZNF558Q96NG5 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
ZNF558Q96NG5 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
ZNF558Q96NG5 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
ZNF558Q96NG5 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
ZNF558Q96NG5 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
ZNF558Q96NG5 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
ZNF558Q96NG5 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC18.95■□□□□ 0.62
ZNF558Q96NG5 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
ZNF558Q96NG5 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC18.95■□□□□ 0.62
ZNF558Q96NG5 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC18.95■□□□□ 0.62
ZNF558Q96NG5 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
ZNF558Q96NG5 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC18.95■□□□□ 0.62
ZNF558Q96NG5 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC18.95■□□□□ 0.62
ZNF558Q96NG5 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC18.95■□□□□ 0.62
ZNF558Q96NG5 COPE-211ENST00000600932 1144 ntTSL 5 BASIC18.95■□□□□ 0.62
ZNF558Q96NG5 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
ZNF558Q96NG5 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC18.95■□□□□ 0.62
ZNF558Q96NG5 ADM-208ENST00000534464 1640 ntTSL 2 BASIC18.95■□□□□ 0.62
ZNF558Q96NG5 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms