Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
CLIP3Q96DZ5 LINC00167-201ENST00000530583 1419 ntBASIC17.31■□□□□ 0.36
CLIP3Q96DZ5 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLIP3Q96DZ5 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLIP3Q96DZ5 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLIP3Q96DZ5 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC17.31■□□□□ 0.36
CLIP3Q96DZ5 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC17.31■□□□□ 0.36
CLIP3Q96DZ5 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CLIP3Q96DZ5 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
CLIP3Q96DZ5 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLIP3Q96DZ5 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CLIP3Q96DZ5 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC17.31■□□□□ 0.36
CLIP3Q96DZ5 HES2-202ENST00000377836 507 ntTSL 2 BASIC17.31■□□□□ 0.36
CLIP3Q96DZ5 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CLIP3Q96DZ5 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CLIP3Q96DZ5 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLIP3Q96DZ5 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC17.31■□□□□ 0.36
CLIP3Q96DZ5 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC17.31■□□□□ 0.36
CLIP3Q96DZ5 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC17.31■□□□□ 0.36
CLIP3Q96DZ5 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC17.31■□□□□ 0.36
CLIP3Q96DZ5 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CLIP3Q96DZ5 LINC01711-201ENST00000598340 967 ntBASIC17.31■□□□□ 0.36
CLIP3Q96DZ5 AL121772.3-201ENST00000610840 674 ntBASIC17.31■□□□□ 0.36
CLIP3Q96DZ5 AC004263.2-201ENST00000617183 678 ntBASIC17.31■□□□□ 0.36
CLIP3Q96DZ5 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLIP3Q96DZ5 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC17.31■□□□□ 0.36
CLIP3Q96DZ5 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC17.31■□□□□ 0.36
CLIP3Q96DZ5 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLIP3Q96DZ5 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLIP3Q96DZ5 UROS-202ENST00000368778 1556 ntTSL 2 BASIC17.31■□□□□ 0.36
CLIP3Q96DZ5 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLIP3Q96DZ5 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLIP3Q96DZ5 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
CLIP3Q96DZ5 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CLIP3Q96DZ5 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLIP3Q96DZ5 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLIP3Q96DZ5 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLIP3Q96DZ5 ANO7L1-203ENST00000602586 1720 ntBASIC17.3■□□□□ 0.36
CLIP3Q96DZ5 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLIP3Q96DZ5 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLIP3Q96DZ5 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLIP3Q96DZ5 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLIP3Q96DZ5 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLIP3Q96DZ5 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLIP3Q96DZ5 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC17.3■□□□□ 0.36
CLIP3Q96DZ5 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC17.3■□□□□ 0.36
CLIP3Q96DZ5 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLIP3Q96DZ5 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
CLIP3Q96DZ5 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLIP3Q96DZ5 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
CLIP3Q96DZ5 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC17.3■□□□□ 0.36
CLIP3Q96DZ5 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC17.3■□□□□ 0.36
CLIP3Q96DZ5 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
CLIP3Q96DZ5 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLIP3Q96DZ5 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CLIP3Q96DZ5 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CLIP3Q96DZ5 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC17.3■□□□□ 0.36
CLIP3Q96DZ5 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CLIP3Q96DZ5 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC17.3■□□□□ 0.36
CLIP3Q96DZ5 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC17.3■□□□□ 0.36
CLIP3Q96DZ5 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC17.3■□□□□ 0.36
CLIP3Q96DZ5 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC17.3■□□□□ 0.36
CLIP3Q96DZ5 FOSL1P1-201ENST00000511041 816 ntBASIC17.3■□□□□ 0.36
CLIP3Q96DZ5 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC17.3■□□□□ 0.36
CLIP3Q96DZ5 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC17.3■□□□□ 0.36
CLIP3Q96DZ5 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLIP3Q96DZ5 AC011840.4-201ENST00000578471 627 ntBASIC17.3■□□□□ 0.36
CLIP3Q96DZ5 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC17.3■□□□□ 0.36
CLIP3Q96DZ5 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC17.3■□□□□ 0.36
CLIP3Q96DZ5 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC17.3■□□□□ 0.36
CLIP3Q96DZ5 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CLIP3Q96DZ5 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
CLIP3Q96DZ5 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CLIP3Q96DZ5 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLIP3Q96DZ5 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLIP3Q96DZ5 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC17.3■□□□□ 0.36
CLIP3Q96DZ5 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLIP3Q96DZ5 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC17.3■□□□□ 0.36
CLIP3Q96DZ5 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLIP3Q96DZ5 AC093503.3-201ENST00000624917 2352 ntBASIC17.3■□□□□ 0.36
CLIP3Q96DZ5 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC17.3■□□□□ 0.36
CLIP3Q96DZ5 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLIP3Q96DZ5 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CLIP3Q96DZ5 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLIP3Q96DZ5 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLIP3Q96DZ5 AC233702.3-201ENST00000578656 1387 ntBASIC17.29■□□□□ 0.36
CLIP3Q96DZ5 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLIP3Q96DZ5 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLIP3Q96DZ5 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC17.29■□□□□ 0.36
CLIP3Q96DZ5 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CLIP3Q96DZ5 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC17.29■□□□□ 0.36
CLIP3Q96DZ5 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CLIP3Q96DZ5 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CLIP3Q96DZ5 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLIP3Q96DZ5 AC004870.1-201ENST00000315132 882 ntBASIC17.29■□□□□ 0.36
CLIP3Q96DZ5 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CLIP3Q96DZ5 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC17.29■□□□□ 0.36
CLIP3Q96DZ5 AC026396.1-201ENST00000419388 421 ntBASIC17.29■□□□□ 0.36
CLIP3Q96DZ5 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC17.29■□□□□ 0.36
CLIP3Q96DZ5 AC091304.2-201ENST00000564639 760 ntBASIC17.29■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms