Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SHROOM3Q8TF72 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
SHROOM3Q8TF72 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC18.28■□□□□ 0.52
SHROOM3Q8TF72 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SHROOM3Q8TF72 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
SHROOM3Q8TF72 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SHROOM3Q8TF72 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
SHROOM3Q8TF72 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC18.28■□□□□ 0.52
SHROOM3Q8TF72 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
SHROOM3Q8TF72 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SHROOM3Q8TF72 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SHROOM3Q8TF72 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SHROOM3Q8TF72 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC18.28■□□□□ 0.52
SHROOM3Q8TF72 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
SHROOM3Q8TF72 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC18.27■□□□□ 0.52
SHROOM3Q8TF72 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SHROOM3Q8TF72 PCDHB18P-201ENST00000524813 2368 ntBASIC18.27■□□□□ 0.52
SHROOM3Q8TF72 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
SHROOM3Q8TF72 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC18.27■□□□□ 0.52
SHROOM3Q8TF72 AC026471.1-201ENST00000564629 3026 ntBASIC18.27■□□□□ 0.52
SHROOM3Q8TF72 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
SHROOM3Q8TF72 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
SHROOM3Q8TF72 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC18.27■□□□□ 0.52
SHROOM3Q8TF72 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
SHROOM3Q8TF72 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SHROOM3Q8TF72 LETM1P2-201ENST00000597330 2178 ntBASIC18.27■□□□□ 0.52
SHROOM3Q8TF72 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC18.27■□□□□ 0.52
SHROOM3Q8TF72 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
SHROOM3Q8TF72 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
SHROOM3Q8TF72 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC18.27■□□□□ 0.52
SHROOM3Q8TF72 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
SHROOM3Q8TF72 AC016734.2-201ENST00000624325 1377 ntBASIC18.27■□□□□ 0.52
SHROOM3Q8TF72 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC18.27■□□□□ 0.52
SHROOM3Q8TF72 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
SHROOM3Q8TF72 AC009154.2-201ENST00000621177 724 ntBASIC18.27■□□□□ 0.52
SHROOM3Q8TF72 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
SHROOM3Q8TF72 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC18.27■□□□□ 0.51
SHROOM3Q8TF72 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
SHROOM3Q8TF72 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
SHROOM3Q8TF72 AL355312.1-201ENST00000407115 2176 ntBASIC18.27■□□□□ 0.51
SHROOM3Q8TF72 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
SHROOM3Q8TF72 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC18.27■□□□□ 0.51
SHROOM3Q8TF72 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC18.27■□□□□ 0.51
SHROOM3Q8TF72 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.51
SHROOM3Q8TF72 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.51
SHROOM3Q8TF72 KRT18P55-202ENST00000578578 1546 ntBASIC18.26■□□□□ 0.51
SHROOM3Q8TF72 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC18.26■□□□□ 0.51
SHROOM3Q8TF72 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SHROOM3Q8TF72 KRT8P26-201ENST00000534154 1276 ntBASIC18.26■□□□□ 0.51
SHROOM3Q8TF72 AL138831.2-201ENST00000606564 490 ntBASIC18.26■□□□□ 0.51
SHROOM3Q8TF72 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SHROOM3Q8TF72 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
SHROOM3Q8TF72 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC18.26■□□□□ 0.51
SHROOM3Q8TF72 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
SHROOM3Q8TF72 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC18.26■□□□□ 0.51
SHROOM3Q8TF72 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SHROOM3Q8TF72 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC18.26■□□□□ 0.51
SHROOM3Q8TF72 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SHROOM3Q8TF72 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
SHROOM3Q8TF72 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC18.26■□□□□ 0.51
SHROOM3Q8TF72 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SHROOM3Q8TF72 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SHROOM3Q8TF72 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
SHROOM3Q8TF72 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SHROOM3Q8TF72 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SHROOM3Q8TF72 GUSBP12-201ENST00000513727 720 ntBASIC18.26■□□□□ 0.51
SHROOM3Q8TF72 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC18.26■□□□□ 0.51
SHROOM3Q8TF72 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC18.26■□□□□ 0.51
SHROOM3Q8TF72 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SHROOM3Q8TF72 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC18.26■□□□□ 0.51
SHROOM3Q8TF72 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SHROOM3Q8TF72 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SHROOM3Q8TF72 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SHROOM3Q8TF72 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
SHROOM3Q8TF72 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
SHROOM3Q8TF72 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
SHROOM3Q8TF72 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
SHROOM3Q8TF72 GNE-204ENST00000539208 2190 ntTSL 2 BASIC18.25■□□□□ 0.51
SHROOM3Q8TF72 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SHROOM3Q8TF72 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SHROOM3Q8TF72 AC233702.3-201ENST00000578656 1387 ntBASIC18.25■□□□□ 0.51
SHROOM3Q8TF72 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
SHROOM3Q8TF72 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC18.25■□□□□ 0.51
SHROOM3Q8TF72 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC18.25■□□□□ 0.51
SHROOM3Q8TF72 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SHROOM3Q8TF72 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC18.25■□□□□ 0.51
SHROOM3Q8TF72 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC18.25■□□□□ 0.51
SHROOM3Q8TF72 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC18.25■□□□□ 0.51
SHROOM3Q8TF72 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC18.25■□□□□ 0.51
SHROOM3Q8TF72 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SHROOM3Q8TF72 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC18.25■□□□□ 0.51
SHROOM3Q8TF72 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC18.25■□□□□ 0.51
SHROOM3Q8TF72 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
SHROOM3Q8TF72 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC18.25■□□□□ 0.51
SHROOM3Q8TF72 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
SHROOM3Q8TF72 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SHROOM3Q8TF72 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
SHROOM3Q8TF72 AC004870.1-201ENST00000315132 882 ntBASIC18.24■□□□□ 0.51
SHROOM3Q8TF72 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
SHROOM3Q8TF72 KLF4P1-201ENST00000412782 1185 ntBASIC18.24■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms