Protein–RNA interactions for Protein: Q6PD62

CTR9, RNA polymerase-associated protein CTR9 homolog, humanhuman

Predictions only

Length 1,173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTR9Q6PD62 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC21.27■■□□□ 1
CTR9Q6PD62 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC21.27■■□□□ 1
CTR9Q6PD62 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
CTR9Q6PD62 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CTR9Q6PD62 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC21.27■■□□□ 1
CTR9Q6PD62 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CTR9Q6PD62 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
CTR9Q6PD62 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
CTR9Q6PD62 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
CTR9Q6PD62 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
CTR9Q6PD62 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
CTR9Q6PD62 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
CTR9Q6PD62 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC21.26■□□□□ 0.99
CTR9Q6PD62 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC21.26■□□□□ 0.99
CTR9Q6PD62 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CTR9Q6PD62 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC21.26■□□□□ 0.99
CTR9Q6PD62 AC004870.1-201ENST00000315132 882 ntBASIC21.26■□□□□ 0.99
CTR9Q6PD62 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CTR9Q6PD62 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC21.26■□□□□ 0.99
CTR9Q6PD62 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
CTR9Q6PD62 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CTR9Q6PD62 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC21.26■□□□□ 0.99
CTR9Q6PD62 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC21.26■□□□□ 0.99
CTR9Q6PD62 AL591684.3-201ENST00000605187 298 ntBASIC21.26■□□□□ 0.99
CTR9Q6PD62 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
CTR9Q6PD62 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
CTR9Q6PD62 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CTR9Q6PD62 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CTR9Q6PD62 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
CTR9Q6PD62 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CTR9Q6PD62 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC21.26■□□□□ 0.99
CTR9Q6PD62 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CTR9Q6PD62 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC21.26■□□□□ 0.99
CTR9Q6PD62 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CTR9Q6PD62 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CTR9Q6PD62 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CTR9Q6PD62 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
CTR9Q6PD62 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CTR9Q6PD62 INTS4P1-201ENST00000438455 1935 ntBASIC21.25■□□□□ 0.99
CTR9Q6PD62 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
CTR9Q6PD62 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CTR9Q6PD62 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CTR9Q6PD62 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
CTR9Q6PD62 EMD-201ENST00000369835 966 ntTSL 3 BASIC21.25■□□□□ 0.99
CTR9Q6PD62 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
CTR9Q6PD62 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC21.25■□□□□ 0.99
CTR9Q6PD62 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
CTR9Q6PD62 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC21.25■□□□□ 0.99
CTR9Q6PD62 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC21.25■□□□□ 0.99
CTR9Q6PD62 BMF-207ENST00000559701 630 ntTSL 3 BASIC21.25■□□□□ 0.99
CTR9Q6PD62 LINC01711-201ENST00000598340 967 ntBASIC21.25■□□□□ 0.99
CTR9Q6PD62 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC21.25■□□□□ 0.99
CTR9Q6PD62 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC21.25■□□□□ 0.99
CTR9Q6PD62 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC21.25■□□□□ 0.99
CTR9Q6PD62 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CTR9Q6PD62 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
CTR9Q6PD62 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
CTR9Q6PD62 AC097374.2-201ENST00000618617 1306 ntBASIC21.25■□□□□ 0.99
CTR9Q6PD62 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
CTR9Q6PD62 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CTR9Q6PD62 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
CTR9Q6PD62 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC21.24■□□□□ 0.99
CTR9Q6PD62 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CTR9Q6PD62 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
CTR9Q6PD62 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CTR9Q6PD62 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CTR9Q6PD62 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CTR9Q6PD62 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
CTR9Q6PD62 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CTR9Q6PD62 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC21.24■□□□□ 0.99
CTR9Q6PD62 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CTR9Q6PD62 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CTR9Q6PD62 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC21.24■□□□□ 0.99
CTR9Q6PD62 AC026396.1-201ENST00000419388 421 ntBASIC21.24■□□□□ 0.99
CTR9Q6PD62 DANCR-204ENST00000444958 709 ntTSL 3 BASIC21.24■□□□□ 0.99
CTR9Q6PD62 FAAHP1-202ENST00000446499 1238 ntBASIC21.24■□□□□ 0.99
CTR9Q6PD62 AC079781.3-201ENST00000449110 356 ntBASIC21.24■□□□□ 0.99
CTR9Q6PD62 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
CTR9Q6PD62 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC21.24■□□□□ 0.99
CTR9Q6PD62 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC21.24■□□□□ 0.99
CTR9Q6PD62 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC21.24■□□□□ 0.99
CTR9Q6PD62 AC104692.2-201ENST00000603054 253 ntBASIC21.24■□□□□ 0.99
CTR9Q6PD62 REXO1L6P-202ENST00000619970 1078 ntBASIC21.24■□□□□ 0.99
CTR9Q6PD62 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC21.24■□□□□ 0.99
CTR9Q6PD62 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
CTR9Q6PD62 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CTR9Q6PD62 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC21.24■□□□□ 0.99
CTR9Q6PD62 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CTR9Q6PD62 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC21.24■□□□□ 0.99
CTR9Q6PD62 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
CTR9Q6PD62 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC21.24■□□□□ 0.99
CTR9Q6PD62 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
CTR9Q6PD62 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CTR9Q6PD62 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
CTR9Q6PD62 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CTR9Q6PD62 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CTR9Q6PD62 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
CTR9Q6PD62 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CTR9Q6PD62 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC21.24■□□□□ 0.99
CTR9Q6PD62 AP000997.3-201ENST00000623333 2250 ntBASIC21.24■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms