Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
ZNF549Q6P9A3 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC17.83■□□□□ 0.44
ZNF549Q6P9A3 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
ZNF549Q6P9A3 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC17.83■□□□□ 0.44
ZNF549Q6P9A3 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC17.83■□□□□ 0.44
ZNF549Q6P9A3 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
ZNF549Q6P9A3 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
ZNF549Q6P9A3 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
ZNF549Q6P9A3 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
ZNF549Q6P9A3 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC17.83■□□□□ 0.44
ZNF549Q6P9A3 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
ZNF549Q6P9A3 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC17.83■□□□□ 0.44
ZNF549Q6P9A3 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
ZNF549Q6P9A3 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
ZNF549Q6P9A3 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
ZNF549Q6P9A3 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC17.82■□□□□ 0.44
ZNF549Q6P9A3 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
ZNF549Q6P9A3 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC17.82■□□□□ 0.44
ZNF549Q6P9A3 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
ZNF549Q6P9A3 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
ZNF549Q6P9A3 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
ZNF549Q6P9A3 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
ZNF549Q6P9A3 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC17.82■□□□□ 0.44
ZNF549Q6P9A3 AK4P3-201ENST00000418260 669 ntBASIC17.82■□□□□ 0.44
ZNF549Q6P9A3 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC17.82■□□□□ 0.44
ZNF549Q6P9A3 AL359075.1-203ENST00000462729 1002 ntBASIC17.82■□□□□ 0.44
ZNF549Q6P9A3 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC17.82■□□□□ 0.44
ZNF549Q6P9A3 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC17.82■□□□□ 0.44
ZNF549Q6P9A3 AC004263.2-201ENST00000617183 678 ntBASIC17.82■□□□□ 0.44
ZNF549Q6P9A3 LITAF-220ENST00000620789 692 ntTSL 5 BASIC17.82■□□□□ 0.44
ZNF549Q6P9A3 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC17.82■□□□□ 0.44
ZNF549Q6P9A3 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
ZNF549Q6P9A3 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
ZNF549Q6P9A3 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
ZNF549Q6P9A3 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
ZNF549Q6P9A3 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
ZNF549Q6P9A3 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
ZNF549Q6P9A3 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
ZNF549Q6P9A3 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
ZNF549Q6P9A3 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
ZNF549Q6P9A3 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
ZNF549Q6P9A3 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
ZNF549Q6P9A3 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC17.81■□□□□ 0.44
ZNF549Q6P9A3 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC17.81■□□□□ 0.44
ZNF549Q6P9A3 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC17.81■□□□□ 0.44
ZNF549Q6P9A3 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC17.81■□□□□ 0.44
ZNF549Q6P9A3 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
ZNF549Q6P9A3 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC17.81■□□□□ 0.44
ZNF549Q6P9A3 HBZP1-201ENST00000354915 429 ntBASIC17.81■□□□□ 0.44
ZNF549Q6P9A3 RCN1P1-201ENST00000400413 996 ntBASIC17.81■□□□□ 0.44
ZNF549Q6P9A3 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC17.81■□□□□ 0.44
ZNF549Q6P9A3 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
ZNF549Q6P9A3 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC17.81■□□□□ 0.44
ZNF549Q6P9A3 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC17.81■□□□□ 0.44
ZNF549Q6P9A3 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
ZNF549Q6P9A3 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
ZNF549Q6P9A3 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC17.81■□□□□ 0.44
ZNF549Q6P9A3 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
ZNF549Q6P9A3 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
ZNF549Q6P9A3 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
ZNF549Q6P9A3 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
ZNF549Q6P9A3 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
ZNF549Q6P9A3 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC17.81■□□□□ 0.44
ZNF549Q6P9A3 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
ZNF549Q6P9A3 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
ZNF549Q6P9A3 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC17.81■□□□□ 0.44
ZNF549Q6P9A3 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
ZNF549Q6P9A3 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
ZNF549Q6P9A3 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
ZNF549Q6P9A3 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
ZNF549Q6P9A3 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
ZNF549Q6P9A3 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
ZNF549Q6P9A3 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
ZNF549Q6P9A3 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
ZNF549Q6P9A3 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
ZNF549Q6P9A3 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
ZNF549Q6P9A3 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
ZNF549Q6P9A3 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC17.8■□□□□ 0.44
ZNF549Q6P9A3 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
ZNF549Q6P9A3 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
ZNF549Q6P9A3 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC17.8■□□□□ 0.44
ZNF549Q6P9A3 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC17.8■□□□□ 0.44
ZNF549Q6P9A3 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC17.8■□□□□ 0.44
ZNF549Q6P9A3 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC17.8■□□□□ 0.44
ZNF549Q6P9A3 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
ZNF549Q6P9A3 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
ZNF549Q6P9A3 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
ZNF549Q6P9A3 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
ZNF549Q6P9A3 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
ZNF549Q6P9A3 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
ZNF549Q6P9A3 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
ZNF549Q6P9A3 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
ZNF549Q6P9A3 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC17.8■□□□□ 0.44
ZNF549Q6P9A3 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
ZNF549Q6P9A3 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC17.79■□□□□ 0.44
ZNF549Q6P9A3 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
ZNF549Q6P9A3 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
ZNF549Q6P9A3 PODN-203ENST00000395871 2744 ntTSL 5 BASIC17.79■□□□□ 0.44
ZNF549Q6P9A3 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC17.79■□□□□ 0.44
ZNF549Q6P9A3 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC17.79■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms