Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
RFX4Q33E94 AC009102.3-201ENST00000623118 1491 ntBASIC16.71■□□□□ 0.27
RFX4Q33E94 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
RFX4Q33E94 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
RFX4Q33E94 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC16.71■□□□□ 0.27
RFX4Q33E94 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
RFX4Q33E94 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC16.71■□□□□ 0.27
RFX4Q33E94 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.26
RFX4Q33E94 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.26
RFX4Q33E94 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.26
RFX4Q33E94 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
RFX4Q33E94 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
RFX4Q33E94 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC16.7■□□□□ 0.26
RFX4Q33E94 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
RFX4Q33E94 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
RFX4Q33E94 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
RFX4Q33E94 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
RFX4Q33E94 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
RFX4Q33E94 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC16.7■□□□□ 0.26
RFX4Q33E94 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
RFX4Q33E94 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
RFX4Q33E94 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
RFX4Q33E94 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC16.7■□□□□ 0.26
RFX4Q33E94 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
RFX4Q33E94 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
RFX4Q33E94 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
RFX4Q33E94 AL023284.2-201ENST00000405850 579 ntBASIC16.7■□□□□ 0.26
RFX4Q33E94 FAM197Y1-201ENST00000421178 764 ntBASIC16.7■□□□□ 0.26
RFX4Q33E94 SAPCD2P4-201ENST00000424595 1171 ntBASIC16.7■□□□□ 0.26
RFX4Q33E94 IRX5-204ENST00000560154 879 ntTSL 5 BASIC16.7■□□□□ 0.26
RFX4Q33E94 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC16.7■□□□□ 0.26
RFX4Q33E94 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC16.7■□□□□ 0.26
RFX4Q33E94 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
RFX4Q33E94 AL359736.2-201ENST00000621992 437 ntBASIC16.7■□□□□ 0.26
RFX4Q33E94 FAM197Y4-202ENST00000622692 608 ntBASIC16.7■□□□□ 0.26
RFX4Q33E94 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC16.7■□□□□ 0.26
RFX4Q33E94 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
RFX4Q33E94 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
RFX4Q33E94 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
RFX4Q33E94 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
RFX4Q33E94 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
RFX4Q33E94 SDHAP2-201ENST00000455183 2001 ntBASIC16.7■□□□□ 0.26
RFX4Q33E94 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
RFX4Q33E94 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
RFX4Q33E94 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
RFX4Q33E94 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
RFX4Q33E94 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
RFX4Q33E94 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
RFX4Q33E94 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC16.7■□□□□ 0.26
RFX4Q33E94 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
RFX4Q33E94 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
RFX4Q33E94 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
RFX4Q33E94 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
RFX4Q33E94 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC16.69■□□□□ 0.26
RFX4Q33E94 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC16.69■□□□□ 0.26
RFX4Q33E94 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
RFX4Q33E94 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
RFX4Q33E94 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC16.69■□□□□ 0.26
RFX4Q33E94 CROCCP2-202ENST00000412962 2773 ntBASIC16.69■□□□□ 0.26
RFX4Q33E94 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
RFX4Q33E94 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
RFX4Q33E94 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
RFX4Q33E94 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
RFX4Q33E94 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC16.69■□□□□ 0.26
RFX4Q33E94 AC096733.2-201ENST00000609937 1394 ntBASIC16.69■□□□□ 0.26
RFX4Q33E94 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
RFX4Q33E94 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC16.69■□□□□ 0.26
RFX4Q33E94 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
RFX4Q33E94 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
RFX4Q33E94 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
RFX4Q33E94 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
RFX4Q33E94 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
RFX4Q33E94 MIR149-201ENST00000384879 89 ntBASIC16.69■□□□□ 0.26
RFX4Q33E94 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
RFX4Q33E94 MCCD1P1-208ENST00000445732 328 ntBASIC16.69■□□□□ 0.26
RFX4Q33E94 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC16.69■□□□□ 0.26
RFX4Q33E94 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
RFX4Q33E94 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC16.69■□□□□ 0.26
RFX4Q33E94 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC16.69■□□□□ 0.26
RFX4Q33E94 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
RFX4Q33E94 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC16.69■□□□□ 0.26
RFX4Q33E94 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
RFX4Q33E94 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC16.69■□□□□ 0.26
RFX4Q33E94 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
RFX4Q33E94 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
RFX4Q33E94 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
RFX4Q33E94 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC16.69■□□□□ 0.26
RFX4Q33E94 AL135905.2-201ENST00000584934 1404 ntBASIC16.69■□□□□ 0.26
RFX4Q33E94 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
RFX4Q33E94 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
RFX4Q33E94 SRI-203ENST00000419179 1307 ntTSL 2 BASIC16.69■□□□□ 0.26
RFX4Q33E94 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
RFX4Q33E94 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC16.69■□□□□ 0.26
RFX4Q33E94 FER1L4-210ENST00000615531 5998 ntBASIC16.68■□□□□ 0.26
RFX4Q33E94 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC16.68■□□□□ 0.26
RFX4Q33E94 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC16.68■□□□□ 0.26
RFX4Q33E94 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
RFX4Q33E94 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
RFX4Q33E94 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
RFX4Q33E94 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms