Protein–RNA interactions for Protein: Q12766

HMGXB3, HMG domain-containing protein 3, humanhuman

Predictions only

Length 1,538 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB3Q12766 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC31.28■■■□□ 2.6
HMGXB3Q12766 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC31.28■■■□□ 2.6
HMGXB3Q12766 VPS29-207ENST00000549970 818 ntTSL 3 BASIC31.28■■■□□ 2.6
HMGXB3Q12766 RN7SL204P-201ENST00000582831 262 ntBASIC31.28■■■□□ 2.6
HMGXB3Q12766 ACTL9-202ENST00000612068 1252 ntBASIC31.28■■■□□ 2.6
HMGXB3Q12766 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC31.28■■■□□ 2.6
HMGXB3Q12766 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC31.28■■■□□ 2.6
HMGXB3Q12766 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC31.28■■■□□ 2.6
HMGXB3Q12766 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
HMGXB3Q12766 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
HMGXB3Q12766 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
HMGXB3Q12766 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
HMGXB3Q12766 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
HMGXB3Q12766 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC31.27■■■□□ 2.6
HMGXB3Q12766 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC31.27■■■□□ 2.6
HMGXB3Q12766 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC31.27■■■□□ 2.6
HMGXB3Q12766 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC31.27■■■□□ 2.6
HMGXB3Q12766 FALEC-201ENST00000416894 566 ntTSL 3 BASIC31.27■■■□□ 2.6
HMGXB3Q12766 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC31.27■■■□□ 2.6
HMGXB3Q12766 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
HMGXB3Q12766 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC31.27■■■□□ 2.6
HMGXB3Q12766 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC31.27■■■□□ 2.6
HMGXB3Q12766 AC009336.1-201ENST00000608941 1553 ntBASIC31.27■■■□□ 2.6
HMGXB3Q12766 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
HMGXB3Q12766 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC31.27■■■□□ 2.6
HMGXB3Q12766 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
HMGXB3Q12766 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC31.26■■■□□ 2.6
HMGXB3Q12766 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC31.26■■■□□ 2.6
HMGXB3Q12766 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC31.26■■■□□ 2.59
HMGXB3Q12766 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC31.26■■■□□ 2.59
HMGXB3Q12766 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC31.26■■■□□ 2.59
HMGXB3Q12766 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC31.26■■■□□ 2.59
HMGXB3Q12766 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC31.26■■■□□ 2.59
HMGXB3Q12766 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC31.26■■■□□ 2.59
HMGXB3Q12766 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC31.26■■■□□ 2.59
HMGXB3Q12766 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC31.26■■■□□ 2.59
HMGXB3Q12766 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC31.26■■■□□ 2.59
HMGXB3Q12766 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC31.26■■■□□ 2.59
HMGXB3Q12766 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
HMGXB3Q12766 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC31.26■■■□□ 2.59
HMGXB3Q12766 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC31.26■■■□□ 2.59
HMGXB3Q12766 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
HMGXB3Q12766 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC31.26■■■□□ 2.59
HMGXB3Q12766 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
HMGXB3Q12766 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC31.25■■■□□ 2.59
HMGXB3Q12766 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC31.25■■■□□ 2.59
HMGXB3Q12766 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC31.25■■■□□ 2.59
HMGXB3Q12766 GPS2P2-201ENST00000430745 888 ntBASIC31.25■■■□□ 2.59
HMGXB3Q12766 UGT1A2P-201ENST00000454886 866 ntBASIC31.25■■■□□ 2.59
HMGXB3Q12766 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC31.25■■■□□ 2.59
HMGXB3Q12766 AP001059.3-201ENST00000619053 235 ntBASIC31.25■■■□□ 2.59
HMGXB3Q12766 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC31.25■■■□□ 2.59
HMGXB3Q12766 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC31.25■■■□□ 2.59
HMGXB3Q12766 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
HMGXB3Q12766 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC31.25■■■□□ 2.59
HMGXB3Q12766 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC31.25■■■□□ 2.59
HMGXB3Q12766 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC31.25■■■□□ 2.59
HMGXB3Q12766 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
HMGXB3Q12766 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC31.25■■■□□ 2.59
HMGXB3Q12766 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
HMGXB3Q12766 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC31.25■■■□□ 2.59
HMGXB3Q12766 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
HMGXB3Q12766 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC31.24■■■□□ 2.59
HMGXB3Q12766 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
HMGXB3Q12766 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC31.24■■■□□ 2.59
HMGXB3Q12766 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
HMGXB3Q12766 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC31.24■■■□□ 2.59
HMGXB3Q12766 AL512356.2-201ENST00000546955 174 ntBASIC31.24■■■□□ 2.59
HMGXB3Q12766 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC31.24■■■□□ 2.59
HMGXB3Q12766 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC31.24■■■□□ 2.59
HMGXB3Q12766 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC31.24■■■□□ 2.59
HMGXB3Q12766 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC31.24■■■□□ 2.59
HMGXB3Q12766 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
HMGXB3Q12766 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
HMGXB3Q12766 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
HMGXB3Q12766 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC31.24■■■□□ 2.59
HMGXB3Q12766 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC31.24■■■□□ 2.59
HMGXB3Q12766 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
HMGXB3Q12766 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
HMGXB3Q12766 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC31.24■■■□□ 2.59
HMGXB3Q12766 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC31.24■■■□□ 2.59
HMGXB3Q12766 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
HMGXB3Q12766 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
HMGXB3Q12766 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC31.24■■■□□ 2.59
HMGXB3Q12766 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC31.24■■■□□ 2.59
HMGXB3Q12766 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
HMGXB3Q12766 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC31.24■■■□□ 2.59
HMGXB3Q12766 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC31.24■■■□□ 2.59
HMGXB3Q12766 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC31.23■■■□□ 2.59
HMGXB3Q12766 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC31.23■■■□□ 2.59
HMGXB3Q12766 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC31.23■■■□□ 2.59
HMGXB3Q12766 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC31.23■■■□□ 2.59
HMGXB3Q12766 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
HMGXB3Q12766 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC31.23■■■□□ 2.59
HMGXB3Q12766 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC31.23■■■□□ 2.59
HMGXB3Q12766 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC31.23■■■□□ 2.59
HMGXB3Q12766 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC31.23■■■□□ 2.59
HMGXB3Q12766 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
HMGXB3Q12766 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
HMGXB3Q12766 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC31.23■■■□□ 2.59
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms