Protein–RNA interactions for Protein: Q01581

HMGCS1, Hydroxymethylglutaryl-CoA synthase, cytoplasmic, humanhuman

Predictions only

Length 520 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1Q01581 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC17.31■□□□□ 0.36
HMGCS1Q01581 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
HMGCS1Q01581 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC17.31■□□□□ 0.36
HMGCS1Q01581 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC17.31■□□□□ 0.36
HMGCS1Q01581 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
HMGCS1Q01581 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HMGCS1Q01581 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
HMGCS1Q01581 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
HMGCS1Q01581 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
HMGCS1Q01581 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC17.31■□□□□ 0.36
HMGCS1Q01581 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
HMGCS1Q01581 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC17.31■□□□□ 0.36
HMGCS1Q01581 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
HMGCS1Q01581 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
HMGCS1Q01581 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
HMGCS1Q01581 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
HMGCS1Q01581 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HMGCS1Q01581 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
HMGCS1Q01581 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC17.3■□□□□ 0.36
HMGCS1Q01581 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
HMGCS1Q01581 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
HMGCS1Q01581 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC17.3■□□□□ 0.36
HMGCS1Q01581 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HMGCS1Q01581 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
HMGCS1Q01581 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC17.3■□□□□ 0.36
HMGCS1Q01581 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
HMGCS1Q01581 SLC25A3P1-201ENST00000443844 931 ntBASIC17.3■□□□□ 0.36
HMGCS1Q01581 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC17.3■□□□□ 0.36
HMGCS1Q01581 CD81-212ENST00000526072 1172 ntTSL 5 BASIC17.3■□□□□ 0.36
HMGCS1Q01581 AC010203.1-204ENST00000548782 407 ntBASIC17.3■□□□□ 0.36
HMGCS1Q01581 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC17.3■□□□□ 0.36
HMGCS1Q01581 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC17.3■□□□□ 0.36
HMGCS1Q01581 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HMGCS1Q01581 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
HMGCS1Q01581 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
HMGCS1Q01581 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HMGCS1Q01581 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
HMGCS1Q01581 AL645608.8-201ENST00000606034 2086 ntBASIC17.3■□□□□ 0.36
HMGCS1Q01581 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC17.3■□□□□ 0.36
HMGCS1Q01581 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HMGCS1Q01581 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
HMGCS1Q01581 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
HMGCS1Q01581 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC17.3■□□□□ 0.36
HMGCS1Q01581 AC012313.1-201ENST00000593393 3059 ntBASIC17.29■□□□□ 0.36
HMGCS1Q01581 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HMGCS1Q01581 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
HMGCS1Q01581 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
HMGCS1Q01581 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
HMGCS1Q01581 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
HMGCS1Q01581 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
HMGCS1Q01581 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HMGCS1Q01581 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HMGCS1Q01581 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HMGCS1Q01581 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
HMGCS1Q01581 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HMGCS1Q01581 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
HMGCS1Q01581 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HMGCS1Q01581 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HMGCS1Q01581 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC17.29■□□□□ 0.36
HMGCS1Q01581 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HMGCS1Q01581 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC17.29■□□□□ 0.36
HMGCS1Q01581 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
HMGCS1Q01581 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC17.29■□□□□ 0.36
HMGCS1Q01581 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC17.29■□□□□ 0.36
HMGCS1Q01581 AC008687.5-201ENST00000593746 558 ntBASIC17.29■□□□□ 0.36
HMGCS1Q01581 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HMGCS1Q01581 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC17.29■□□□□ 0.36
HMGCS1Q01581 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
HMGCS1Q01581 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HMGCS1Q01581 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
HMGCS1Q01581 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
HMGCS1Q01581 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC17.29■□□□□ 0.36
HMGCS1Q01581 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC17.29■□□□□ 0.36
HMGCS1Q01581 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
HMGCS1Q01581 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
HMGCS1Q01581 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HMGCS1Q01581 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC17.29■□□□□ 0.36
HMGCS1Q01581 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
HMGCS1Q01581 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
HMGCS1Q01581 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
HMGCS1Q01581 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HMGCS1Q01581 AC141586.5-201ENST00000624546 2050 ntBASIC17.28■□□□□ 0.36
HMGCS1Q01581 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HMGCS1Q01581 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC17.28■□□□□ 0.36
HMGCS1Q01581 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC17.28■□□□□ 0.36
HMGCS1Q01581 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HMGCS1Q01581 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HMGCS1Q01581 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HMGCS1Q01581 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
HMGCS1Q01581 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HMGCS1Q01581 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HMGCS1Q01581 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC17.28■□□□□ 0.36
HMGCS1Q01581 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC17.28■□□□□ 0.36
HMGCS1Q01581 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC17.28■□□□□ 0.36
HMGCS1Q01581 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC17.28■□□□□ 0.36
HMGCS1Q01581 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC17.28■□□□□ 0.36
HMGCS1Q01581 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HMGCS1Q01581 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC17.28■□□□□ 0.36
HMGCS1Q01581 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC17.28■□□□□ 0.36
HMGCS1Q01581 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC17.28■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 51.5 ms