Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SRP54P61011 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SRP54P61011 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC17.68■□□□□ 0.42
SRP54P61011 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
SRP54P61011 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
SRP54P61011 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SRP54P61011 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
SRP54P61011 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SRP54P61011 AC132938.6-201ENST00000623828 1655 ntBASIC17.67■□□□□ 0.42
SRP54P61011 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
SRP54P61011 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC17.67■□□□□ 0.42
SRP54P61011 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SRP54P61011 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
SRP54P61011 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC17.67■□□□□ 0.42
SRP54P61011 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SRP54P61011 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
SRP54P61011 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC17.67■□□□□ 0.42
SRP54P61011 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC17.67■□□□□ 0.42
SRP54P61011 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SRP54P61011 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC17.67■□□□□ 0.42
SRP54P61011 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SRP54P61011 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
SRP54P61011 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
SRP54P61011 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
SRP54P61011 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
SRP54P61011 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC17.67■□□□□ 0.42
SRP54P61011 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC17.67■□□□□ 0.42
SRP54P61011 AC132008.2-207ENST00000454517 770 ntBASIC17.67■□□□□ 0.42
SRP54P61011 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC17.67■□□□□ 0.42
SRP54P61011 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SRP54P61011 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SRP54P61011 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SRP54P61011 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC17.67■□□□□ 0.42
SRP54P61011 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
SRP54P61011 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SRP54P61011 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SRP54P61011 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SRP54P61011 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SRP54P61011 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC17.67■□□□□ 0.42
SRP54P61011 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
SRP54P61011 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC17.67■□□□□ 0.42
SRP54P61011 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SRP54P61011 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
SRP54P61011 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SRP54P61011 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SRP54P61011 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SRP54P61011 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SRP54P61011 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SRP54P61011 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
SRP54P61011 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SRP54P61011 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC17.66■□□□□ 0.42
SRP54P61011 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SRP54P61011 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
SRP54P61011 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SRP54P61011 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
SRP54P61011 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC17.66■□□□□ 0.42
SRP54P61011 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SRP54P61011 VPS51-217ENST00000639871 243 ntTSL 5 BASIC17.66■□□□□ 0.42
SRP54P61011 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC17.66■□□□□ 0.42
SRP54P61011 HTR7P1-202ENST00000624664 4411 ntBASIC17.66■□□□□ 0.42
SRP54P61011 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SRP54P61011 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SRP54P61011 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SRP54P61011 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SRP54P61011 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SRP54P61011 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC17.66■□□□□ 0.42
SRP54P61011 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
SRP54P61011 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SRP54P61011 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SRP54P61011 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
SRP54P61011 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC17.65■□□□□ 0.42
SRP54P61011 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SRP54P61011 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SRP54P61011 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SRP54P61011 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SRP54P61011 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SRP54P61011 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
SRP54P61011 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
SRP54P61011 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC17.65■□□□□ 0.42
SRP54P61011 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC17.65■□□□□ 0.42
SRP54P61011 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC17.65■□□□□ 0.42
SRP54P61011 AL662844.1-201ENST00000546340 181 ntBASIC17.65■□□□□ 0.42
SRP54P61011 AC011467.2-201ENST00000598425 242 ntBASIC17.65■□□□□ 0.42
SRP54P61011 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SRP54P61011 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SRP54P61011 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SRP54P61011 PHGDH-209ENST00000641074 1780 ntBASIC17.65■□□□□ 0.42
SRP54P61011 TNXA-203ENST00000507684 2038 ntBASIC17.65■□□□□ 0.42
SRP54P61011 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC17.65■□□□□ 0.42
SRP54P61011 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SRP54P61011 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SRP54P61011 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SRP54P61011 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
SRP54P61011 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
SRP54P61011 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
SRP54P61011 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
SRP54P61011 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
SRP54P61011 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
SRP54P61011 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
SRP54P61011 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms