Protein–RNA interactions for Protein: P55287

CDH11, Cadherin-11, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH11P55287 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
CDH11P55287 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC16.46■□□□□ 0.23
CDH11P55287 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC16.46■□□□□ 0.23
CDH11P55287 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CDH11P55287 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC16.46■□□□□ 0.23
CDH11P55287 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CDH11P55287 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CDH11P55287 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CDH11P55287 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CDH11P55287 AC034236.2-201ENST00000606662 1610 ntBASIC16.46■□□□□ 0.23
CDH11P55287 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CDH11P55287 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CDH11P55287 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
CDH11P55287 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC16.46■□□□□ 0.23
CDH11P55287 AL353719.1-201ENST00000566847 864 ntBASIC16.46■□□□□ 0.23
CDH11P55287 LINC01238-205ENST00000567549 1107 ntBASIC16.46■□□□□ 0.23
CDH11P55287 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
CDH11P55287 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
CDH11P55287 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
CDH11P55287 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CDH11P55287 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CDH11P55287 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CDH11P55287 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
CDH11P55287 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC16.46■□□□□ 0.23
CDH11P55287 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
CDH11P55287 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
CDH11P55287 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CDH11P55287 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
CDH11P55287 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.22
CDH11P55287 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.22
CDH11P55287 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.22
CDH11P55287 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CDH11P55287 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CDH11P55287 KRT8P50-201ENST00000562022 1438 ntBASIC16.45■□□□□ 0.22
CDH11P55287 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CDH11P55287 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
CDH11P55287 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CDH11P55287 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CDH11P55287 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC16.45■□□□□ 0.22
CDH11P55287 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC16.45■□□□□ 0.22
CDH11P55287 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CDH11P55287 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
CDH11P55287 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CDH11P55287 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC16.45■□□□□ 0.22
CDH11P55287 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CDH11P55287 MCCD1P1-208ENST00000445732 328 ntBASIC16.45■□□□□ 0.22
CDH11P55287 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
CDH11P55287 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC16.45■□□□□ 0.22
CDH11P55287 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
CDH11P55287 WWOX-216ENST00000569818 525 ntBASIC16.45■□□□□ 0.22
CDH11P55287 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
CDH11P55287 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CDH11P55287 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC16.45■□□□□ 0.22
CDH11P55287 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CDH11P55287 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC16.45■□□□□ 0.22
CDH11P55287 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC16.45■□□□□ 0.22
CDH11P55287 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
CDH11P55287 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CDH11P55287 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
CDH11P55287 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC16.45■□□□□ 0.22
CDH11P55287 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CDH11P55287 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CDH11P55287 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
CDH11P55287 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC16.45■□□□□ 0.22
CDH11P55287 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC16.45■□□□□ 0.22
CDH11P55287 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC16.45■□□□□ 0.22
CDH11P55287 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CDH11P55287 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC16.45■□□□□ 0.22
CDH11P55287 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC16.45■□□□□ 0.22
CDH11P55287 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CDH11P55287 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
CDH11P55287 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC16.45■□□□□ 0.22
CDH11P55287 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CDH11P55287 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC16.45■□□□□ 0.22
CDH11P55287 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CDH11P55287 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDH11P55287 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDH11P55287 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDH11P55287 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDH11P55287 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDH11P55287 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDH11P55287 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDH11P55287 NARF-204ENST00000390006 1766 ntTSL 2 BASIC16.44■□□□□ 0.22
CDH11P55287 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
CDH11P55287 AC006116.8-202ENST00000587620 1550 ntBASIC16.44■□□□□ 0.22
CDH11P55287 AC099343.3-201ENST00000605834 2503 ntBASIC16.44■□□□□ 0.22
CDH11P55287 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDH11P55287 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDH11P55287 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDH11P55287 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDH11P55287 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC16.44■□□□□ 0.22
CDH11P55287 AC117947.1-201ENST00000427448 529 ntBASIC16.44■□□□□ 0.22
CDH11P55287 ELP6-205ENST00000439305 880 ntTSL 2 BASIC16.44■□□□□ 0.22
CDH11P55287 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC16.44■□□□□ 0.22
CDH11P55287 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
CDH11P55287 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDH11P55287 AC008622.2-201ENST00000617006 1229 ntBASIC16.44■□□□□ 0.22
CDH11P55287 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC16.44■□□□□ 0.22
CDH11P55287 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC16.44■□□□□ 0.22
CDH11P55287 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC16.44■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms