Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CDX1P47902 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CDX1P47902 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CDX1P47902 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
CDX1P47902 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CDX1P47902 DUX4L26-201ENST00000489078 1255 ntBASIC14.67□□□□□ -0.06
CDX1P47902 COX11P1-201ENST00000489116 835 ntBASIC14.67□□□□□ -0.06
CDX1P47902 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC14.67□□□□□ -0.06
CDX1P47902 NME3-204ENST00000563498 920 ntTSL 2 BASIC14.67□□□□□ -0.06
CDX1P47902 LINC01238-205ENST00000567549 1107 ntBASIC14.67□□□□□ -0.06
CDX1P47902 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC14.67□□□□□ -0.06
CDX1P47902 RBM42-202ENST00000586618 771 ntTSL 3 BASIC14.67□□□□□ -0.06
CDX1P47902 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CDX1P47902 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
CDX1P47902 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC14.67□□□□□ -0.06
CDX1P47902 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CDX1P47902 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC14.67□□□□□ -0.06
CDX1P47902 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
CDX1P47902 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CDX1P47902 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CDX1P47902 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CDX1P47902 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC14.67□□□□□ -0.06
CDX1P47902 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC14.67□□□□□ -0.06
CDX1P47902 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
CDX1P47902 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CDX1P47902 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC14.67□□□□□ -0.06
CDX1P47902 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CDX1P47902 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
CDX1P47902 KRT8P3-201ENST00000519669 1449 ntBASIC14.66□□□□□ -0.06
CDX1P47902 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC14.66□□□□□ -0.06
CDX1P47902 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
CDX1P47902 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CDX1P47902 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CDX1P47902 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC14.66□□□□□ -0.06
CDX1P47902 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC14.66□□□□□ -0.06
CDX1P47902 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
CDX1P47902 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
CDX1P47902 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
CDX1P47902 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CDX1P47902 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CDX1P47902 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
CDX1P47902 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CDX1P47902 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC14.66□□□□□ -0.06
CDX1P47902 FP475955.4-201ENST00000623131 1990 ntBASIC14.66□□□□□ -0.06
CDX1P47902 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
CDX1P47902 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
CDX1P47902 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC14.66□□□□□ -0.06
CDX1P47902 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC14.66□□□□□ -0.06
CDX1P47902 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
CDX1P47902 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC14.66□□□□□ -0.06
CDX1P47902 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CDX1P47902 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CDX1P47902 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC14.66□□□□□ -0.06
CDX1P47902 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
CDX1P47902 AP000523.1-201ENST00000398242 1049 ntBASIC14.66□□□□□ -0.06
CDX1P47902 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC14.66□□□□□ -0.06
CDX1P47902 AK4P3-201ENST00000418260 669 ntBASIC14.66□□□□□ -0.06
CDX1P47902 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
CDX1P47902 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC14.66□□□□□ -0.06
CDX1P47902 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
CDX1P47902 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CDX1P47902 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
CDX1P47902 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CDX1P47902 NFIC-211ENST00000641145 8399 ntBASIC14.66□□□□□ -0.06
CDX1P47902 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
CDX1P47902 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC14.66□□□□□ -0.06
CDX1P47902 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
CDX1P47902 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC14.66□□□□□ -0.06
CDX1P47902 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
CDX1P47902 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC14.66□□□□□ -0.06
CDX1P47902 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC14.66□□□□□ -0.06
CDX1P47902 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CDX1P47902 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
CDX1P47902 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC14.66□□□□□ -0.06
CDX1P47902 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC14.65□□□□□ -0.06
CDX1P47902 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC14.65□□□□□ -0.06
CDX1P47902 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
CDX1P47902 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
CDX1P47902 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CDX1P47902 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CDX1P47902 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC14.65□□□□□ -0.06
CDX1P47902 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CDX1P47902 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CDX1P47902 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CDX1P47902 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
CDX1P47902 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CDX1P47902 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CDX1P47902 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
CDX1P47902 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
CDX1P47902 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CDX1P47902 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC14.65□□□□□ -0.06
CDX1P47902 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC14.65□□□□□ -0.06
CDX1P47902 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC14.65□□□□□ -0.06
CDX1P47902 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
CDX1P47902 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC14.65□□□□□ -0.06
CDX1P47902 AC006011.2-201ENST00000621313 1158 ntBASIC14.65□□□□□ -0.06
CDX1P47902 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC14.65□□□□□ -0.06
CDX1P47902 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CDX1P47902 AC108860.2-201ENST00000562760 2183 ntBASIC14.65□□□□□ -0.06
CDX1P47902 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms