Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 CXCL1P1-201ENST00000502804 216 ntBASIC21.04■□□□□ 0.96
SCN4AP35499 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC21.04■□□□□ 0.96
SCN4AP35499 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC21.04■□□□□ 0.96
SCN4AP35499 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SCN4AP35499 SERF2-217ENST00000630046 862 ntTSL 5 BASIC21.04■□□□□ 0.96
SCN4AP35499 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
SCN4AP35499 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SCN4AP35499 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC21.04■□□□□ 0.96
SCN4AP35499 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC21.04■□□□□ 0.96
SCN4AP35499 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SCN4AP35499 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
SCN4AP35499 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC21.04■□□□□ 0.96
SCN4AP35499 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC21.04■□□□□ 0.96
SCN4AP35499 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC21.04■□□□□ 0.96
SCN4AP35499 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SCN4AP35499 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC21.04■□□□□ 0.96
SCN4AP35499 HNRNPA1P40-201ENST00000426371 1278 ntBASIC21.04■□□□□ 0.96
SCN4AP35499 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
SCN4AP35499 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
SCN4AP35499 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC21.04■□□□□ 0.96
SCN4AP35499 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
SCN4AP35499 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
SCN4AP35499 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SCN4AP35499 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC21.03■□□□□ 0.96
SCN4AP35499 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SCN4AP35499 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC21.03■□□□□ 0.96
SCN4AP35499 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SCN4AP35499 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
SCN4AP35499 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC21.03■□□□□ 0.96
SCN4AP35499 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC21.03■□□□□ 0.96
SCN4AP35499 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC21.03■□□□□ 0.96
SCN4AP35499 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
SCN4AP35499 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC21.03■□□□□ 0.96
SCN4AP35499 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC21.03■□□□□ 0.96
SCN4AP35499 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC21.03■□□□□ 0.96
SCN4AP35499 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC21.03■□□□□ 0.96
SCN4AP35499 CYB561-216ENST00000582297 897 ntTSL 3 BASIC21.03■□□□□ 0.96
SCN4AP35499 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SCN4AP35499 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SCN4AP35499 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SCN4AP35499 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SCN4AP35499 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SCN4AP35499 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SCN4AP35499 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SCN4AP35499 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SCN4AP35499 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SCN4AP35499 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SCN4AP35499 GRAP-202ENST00000395635 834 ntTSL 2 BASIC21.02■□□□□ 0.96
SCN4AP35499 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC21.02■□□□□ 0.96
SCN4AP35499 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC21.02■□□□□ 0.96
SCN4AP35499 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC21.02■□□□□ 0.96
SCN4AP35499 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SCN4AP35499 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SCN4AP35499 AL049757.1-201ENST00000616842 1596 ntBASIC21.02■□□□□ 0.96
SCN4AP35499 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC21.02■□□□□ 0.96
SCN4AP35499 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC21.02■□□□□ 0.96
SCN4AP35499 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SCN4AP35499 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC21.02■□□□□ 0.95
SCN4AP35499 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.95
SCN4AP35499 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
SCN4AP35499 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
SCN4AP35499 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
SCN4AP35499 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SCN4AP35499 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC21.01■□□□□ 0.95
SCN4AP35499 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC21.01■□□□□ 0.95
SCN4AP35499 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC21.01■□□□□ 0.95
SCN4AP35499 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SCN4AP35499 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC21.01■□□□□ 0.95
SCN4AP35499 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC21.01■□□□□ 0.95
SCN4AP35499 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
SCN4AP35499 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC21.01■□□□□ 0.95
SCN4AP35499 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC21.01■□□□□ 0.95
SCN4AP35499 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SCN4AP35499 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC21.01■□□□□ 0.95
SCN4AP35499 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC21.01■□□□□ 0.95
SCN4AP35499 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC21.01■□□□□ 0.95
SCN4AP35499 LINC02560-201ENST00000596379 459 ntBASIC21.01■□□□□ 0.95
SCN4AP35499 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
SCN4AP35499 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC21.01■□□□□ 0.95
SCN4AP35499 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SCN4AP35499 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
SCN4AP35499 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC21■□□□□ 0.95
SCN4AP35499 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SCN4AP35499 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC21■□□□□ 0.95
SCN4AP35499 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC21■□□□□ 0.95
SCN4AP35499 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC21■□□□□ 0.95
SCN4AP35499 HNRNPFP1-201ENST00000391730 1133 ntBASIC21■□□□□ 0.95
SCN4AP35499 KLF2P3-201ENST00000451977 1087 ntBASIC21■□□□□ 0.95
SCN4AP35499 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC21■□□□□ 0.95
SCN4AP35499 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC21■□□□□ 0.95
SCN4AP35499 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC21■□□□□ 0.95
SCN4AP35499 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC21■□□□□ 0.95
SCN4AP35499 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
SCN4AP35499 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC21■□□□□ 0.95
SCN4AP35499 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
SCN4AP35499 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
SCN4AP35499 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC21■□□□□ 0.95
SCN4AP35499 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC21■□□□□ 0.95
SCN4AP35499 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SCN4AP35499 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms