Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC15.63■□□□□ 0.09
COL8A1P27658 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC15.63■□□□□ 0.09
COL8A1P27658 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC15.63■□□□□ 0.09
COL8A1P27658 AP000867.4-201ENST00000641616 219 ntBASIC15.63■□□□□ 0.09
COL8A1P27658 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC15.63■□□□□ 0.09
COL8A1P27658 AC087289.5-201ENST00000586076 3175 ntBASIC15.63■□□□□ 0.09
COL8A1P27658 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
COL8A1P27658 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
COL8A1P27658 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC15.63■□□□□ 0.09
COL8A1P27658 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
COL8A1P27658 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
COL8A1P27658 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
COL8A1P27658 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
COL8A1P27658 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
COL8A1P27658 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC15.63■□□□□ 0.09
COL8A1P27658 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC15.63■□□□□ 0.09
COL8A1P27658 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC15.63■□□□□ 0.09
COL8A1P27658 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
COL8A1P27658 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
COL8A1P27658 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
COL8A1P27658 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC15.62■□□□□ 0.09
COL8A1P27658 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
COL8A1P27658 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
COL8A1P27658 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
COL8A1P27658 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC15.62■□□□□ 0.09
COL8A1P27658 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
COL8A1P27658 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
COL8A1P27658 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
COL8A1P27658 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC15.62■□□□□ 0.09
COL8A1P27658 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
COL8A1P27658 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC15.62■□□□□ 0.09
COL8A1P27658 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC15.62■□□□□ 0.09
COL8A1P27658 AC113404.2-201ENST00000507884 177 ntBASIC15.62■□□□□ 0.09
COL8A1P27658 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC15.62■□□□□ 0.09
COL8A1P27658 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC15.62■□□□□ 0.09
COL8A1P27658 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC15.62■□□□□ 0.09
COL8A1P27658 PUS1-205ENST00000535067 838 ntTSL 3 BASIC15.62■□□□□ 0.09
COL8A1P27658 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
COL8A1P27658 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC15.62■□□□□ 0.09
COL8A1P27658 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC15.62■□□□□ 0.09
COL8A1P27658 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC15.62■□□□□ 0.09
COL8A1P27658 PGM5P2-202ENST00000637225 1043 ntBASIC15.62■□□□□ 0.09
COL8A1P27658 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
COL8A1P27658 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
COL8A1P27658 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
COL8A1P27658 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC15.62■□□□□ 0.09
COL8A1P27658 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
COL8A1P27658 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
COL8A1P27658 BID-204ENST00000399767 2129 ntTSL 2 BASIC15.62■□□□□ 0.09
COL8A1P27658 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
COL8A1P27658 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
COL8A1P27658 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
COL8A1P27658 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC15.62■□□□□ 0.09
COL8A1P27658 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
COL8A1P27658 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC15.62■□□□□ 0.09
COL8A1P27658 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
COL8A1P27658 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
COL8A1P27658 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
COL8A1P27658 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
COL8A1P27658 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL8A1P27658 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC15.61■□□□□ 0.09
COL8A1P27658 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC15.61■□□□□ 0.09
COL8A1P27658 HEIH-201ENST00000623091 1652 ntBASIC15.61■□□□□ 0.09
COL8A1P27658 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL8A1P27658 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL8A1P27658 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL8A1P27658 AC112907.3-201ENST00000577781 2400 ntBASIC15.61■□□□□ 0.09
COL8A1P27658 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC15.61■□□□□ 0.09
COL8A1P27658 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL8A1P27658 HLA-DRB6-201ENST00000411500 1235 ntBASIC15.61■□□□□ 0.09
COL8A1P27658 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC15.61■□□□□ 0.09
COL8A1P27658 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC15.61■□□□□ 0.09
COL8A1P27658 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
COL8A1P27658 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC15.61■□□□□ 0.09
COL8A1P27658 RPL28-205ENST00000558131 444 ntTSL 5 BASIC15.61■□□□□ 0.09
COL8A1P27658 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
COL8A1P27658 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC15.61■□□□□ 0.09
COL8A1P27658 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC15.61■□□□□ 0.09
COL8A1P27658 MIR4751-201ENST00000578027 74 ntBASIC15.61■□□□□ 0.09
COL8A1P27658 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL8A1P27658 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC15.61■□□□□ 0.09
COL8A1P27658 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL8A1P27658 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
COL8A1P27658 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
COL8A1P27658 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL8A1P27658 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL8A1P27658 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL8A1P27658 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL8A1P27658 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL8A1P27658 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL8A1P27658 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
COL8A1P27658 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL8A1P27658 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL8A1P27658 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL8A1P27658 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL8A1P27658 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL8A1P27658 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL8A1P27658 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC15.61■□□□□ 0.09
COL8A1P27658 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL8A1P27658 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC15.61■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms