Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC18.37■□□□□ 0.53
COL9A1P20849 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC18.37■□□□□ 0.53
COL9A1P20849 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC18.37■□□□□ 0.53
COL9A1P20849 AL589182.2-201ENST00000619332 1049 ntBASIC18.37■□□□□ 0.53
COL9A1P20849 AC025048.6-201ENST00000634326 1161 ntBASIC18.37■□□□□ 0.53
COL9A1P20849 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC18.37■□□□□ 0.53
COL9A1P20849 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL9A1P20849 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
COL9A1P20849 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL9A1P20849 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL9A1P20849 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
COL9A1P20849 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL9A1P20849 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL9A1P20849 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL9A1P20849 AL024508.2-201ENST00000607749 1894 ntBASIC18.37■□□□□ 0.53
COL9A1P20849 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL9A1P20849 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC18.37■□□□□ 0.53
COL9A1P20849 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL9A1P20849 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC18.37■□□□□ 0.53
COL9A1P20849 AC005332.7-201ENST00000614046 2005 ntBASIC18.37■□□□□ 0.53
COL9A1P20849 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL9A1P20849 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
COL9A1P20849 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC18.37■□□□□ 0.53
COL9A1P20849 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC18.37■□□□□ 0.53
COL9A1P20849 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
COL9A1P20849 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL9A1P20849 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
COL9A1P20849 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL9A1P20849 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC18.36■□□□□ 0.53
COL9A1P20849 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC18.36■□□□□ 0.53
COL9A1P20849 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL9A1P20849 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL9A1P20849 CBR1-202ENST00000399191 838 ntTSL 3 BASIC18.36■□□□□ 0.53
COL9A1P20849 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL9A1P20849 AC055876.3-201ENST00000431496 288 ntBASIC18.36■□□□□ 0.53
COL9A1P20849 RPS2P32-201ENST00000439199 892 ntBASIC18.36■□□□□ 0.53
COL9A1P20849 ACTG1P14-201ENST00000446382 1122 ntBASIC18.36■□□□□ 0.53
COL9A1P20849 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC18.36■□□□□ 0.53
COL9A1P20849 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
COL9A1P20849 KRT17P7-201ENST00000451704 1104 ntBASIC18.36■□□□□ 0.53
COL9A1P20849 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
COL9A1P20849 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
COL9A1P20849 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC18.36■□□□□ 0.53
COL9A1P20849 MYLKP1-201ENST00000509077 1580 ntBASIC18.36■□□□□ 0.53
COL9A1P20849 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC18.36■□□□□ 0.53
COL9A1P20849 AL499627.1-201ENST00000569373 2188 ntBASIC18.36■□□□□ 0.53
COL9A1P20849 NKAPP1-205ENST00000585790 367 ntBASIC18.36■□□□□ 0.53
COL9A1P20849 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
COL9A1P20849 AC138649.4-201ENST00000612222 287 ntBASIC18.36■□□□□ 0.53
COL9A1P20849 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL9A1P20849 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL9A1P20849 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL9A1P20849 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC18.35■□□□□ 0.53
COL9A1P20849 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
COL9A1P20849 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL9A1P20849 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC18.35■□□□□ 0.53
COL9A1P20849 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL9A1P20849 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC18.35■□□□□ 0.53
COL9A1P20849 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL9A1P20849 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL9A1P20849 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC18.35■□□□□ 0.53
COL9A1P20849 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL9A1P20849 ASL-204ENST00000395331 1538 ntTSL 5 BASIC18.35■□□□□ 0.53
COL9A1P20849 AL133338.1-201ENST00000565695 1517 ntBASIC18.35■□□□□ 0.53
COL9A1P20849 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC18.35■□□□□ 0.53
COL9A1P20849 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
COL9A1P20849 AC112777.1-201ENST00000540175 1423 ntBASIC18.35■□□□□ 0.53
COL9A1P20849 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL9A1P20849 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
COL9A1P20849 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC18.35■□□□□ 0.53
COL9A1P20849 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
COL9A1P20849 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
COL9A1P20849 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC18.35■□□□□ 0.53
COL9A1P20849 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC18.35■□□□□ 0.53
COL9A1P20849 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL9A1P20849 SLBP-205ENST00000488267 987 ntTSL 2 BASIC18.35■□□□□ 0.53
COL9A1P20849 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
COL9A1P20849 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC18.35■□□□□ 0.53
COL9A1P20849 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC18.35■□□□□ 0.53
COL9A1P20849 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
COL9A1P20849 AL513210.1-201ENST00000629608 234 ntBASIC18.35■□□□□ 0.53
COL9A1P20849 ADK-206ENST00000541550 2222 ntTSL 2 BASIC18.35■□□□□ 0.53
COL9A1P20849 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
COL9A1P20849 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL9A1P20849 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
COL9A1P20849 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC18.35■□□□□ 0.53
COL9A1P20849 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC18.35■□□□□ 0.53
COL9A1P20849 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC18.34■□□□□ 0.53
COL9A1P20849 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
COL9A1P20849 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
COL9A1P20849 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL9A1P20849 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL9A1P20849 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL9A1P20849 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
COL9A1P20849 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC18.34■□□□□ 0.53
COL9A1P20849 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC18.34■□□□□ 0.53
COL9A1P20849 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL9A1P20849 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL9A1P20849 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL9A1P20849 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms