Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
ERCC3P19447 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC20.75■□□□□ 0.91
ERCC3P19447 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC20.75■□□□□ 0.91
ERCC3P19447 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC20.75■□□□□ 0.91
ERCC3P19447 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
ERCC3P19447 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
ERCC3P19447 COBL-210ENST00000632460 1941 ntTSL 5 BASIC20.74■□□□□ 0.91
ERCC3P19447 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
ERCC3P19447 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC20.74■□□□□ 0.91
ERCC3P19447 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
ERCC3P19447 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
ERCC3P19447 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC20.74■□□□□ 0.91
ERCC3P19447 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
ERCC3P19447 PAN3-AS1-201ENST00000563843 1351 ntBASIC20.74■□□□□ 0.91
ERCC3P19447 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC20.74■□□□□ 0.91
ERCC3P19447 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
ERCC3P19447 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
ERCC3P19447 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC20.74■□□□□ 0.91
ERCC3P19447 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
ERCC3P19447 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
ERCC3P19447 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC20.74■□□□□ 0.91
ERCC3P19447 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
ERCC3P19447 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
ERCC3P19447 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
ERCC3P19447 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC20.74■□□□□ 0.91
ERCC3P19447 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC20.74■□□□□ 0.91
ERCC3P19447 HNRNPDP1-201ENST00000439535 754 ntBASIC20.74■□□□□ 0.91
ERCC3P19447 DANCR-204ENST00000444958 709 ntTSL 3 BASIC20.74■□□□□ 0.91
ERCC3P19447 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC20.74■□□□□ 0.91
ERCC3P19447 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC20.74■□□□□ 0.91
ERCC3P19447 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC20.74■□□□□ 0.91
ERCC3P19447 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC20.74■□□□□ 0.91
ERCC3P19447 FAM215A-202ENST00000632077 792 ntBASIC20.74■□□□□ 0.91
ERCC3P19447 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
ERCC3P19447 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
ERCC3P19447 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
ERCC3P19447 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
ERCC3P19447 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
ERCC3P19447 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
ERCC3P19447 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
ERCC3P19447 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
ERCC3P19447 WIZP1-201ENST00000531444 2299 ntBASIC20.74■□□□□ 0.91
ERCC3P19447 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
ERCC3P19447 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
ERCC3P19447 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC20.73■□□□□ 0.91
ERCC3P19447 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
ERCC3P19447 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
ERCC3P19447 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
ERCC3P19447 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
ERCC3P19447 AC125634.1-201ENST00000438758 1403 ntBASIC20.73■□□□□ 0.91
ERCC3P19447 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
ERCC3P19447 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
ERCC3P19447 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
ERCC3P19447 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC20.73■□□□□ 0.91
ERCC3P19447 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC20.73■□□□□ 0.91
ERCC3P19447 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC20.73■□□□□ 0.91
ERCC3P19447 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC20.73■□□□□ 0.91
ERCC3P19447 AC106730.1-201ENST00000566722 1090 ntBASIC20.73■□□□□ 0.91
ERCC3P19447 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC20.73■□□□□ 0.91
ERCC3P19447 AC011467.2-201ENST00000598425 242 ntBASIC20.73■□□□□ 0.91
ERCC3P19447 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
ERCC3P19447 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
ERCC3P19447 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
ERCC3P19447 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
ERCC3P19447 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC20.73■□□□□ 0.91
ERCC3P19447 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC20.73■□□□□ 0.91
ERCC3P19447 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC20.73■□□□□ 0.91
ERCC3P19447 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
ERCC3P19447 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
ERCC3P19447 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
ERCC3P19447 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC20.73■□□□□ 0.91
ERCC3P19447 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
ERCC3P19447 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
ERCC3P19447 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
ERCC3P19447 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC20.72■□□□□ 0.91
ERCC3P19447 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
ERCC3P19447 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
ERCC3P19447 RPP21-221ENST00000428040 594 ntTSL 2 BASIC20.72■□□□□ 0.91
ERCC3P19447 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
ERCC3P19447 SCARNA2-201ENST00000458748 420 ntBASIC20.72■□□□□ 0.91
ERCC3P19447 KRT18P58-201ENST00000527480 1120 ntBASIC20.72■□□□□ 0.91
ERCC3P19447 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
ERCC3P19447 AC139887.3-201ENST00000568585 713 ntBASIC20.72■□□□□ 0.91
ERCC3P19447 LITAF-211ENST00000572255 516 ntTSL 4 BASIC20.72■□□□□ 0.91
ERCC3P19447 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC20.72■□□□□ 0.91
ERCC3P19447 PRKN-208ENST00000610470 531 ntTSL 2 BASIC20.72■□□□□ 0.91
ERCC3P19447 PRKN-209ENST00000612485 225 ntTSL 5 BASIC20.72■□□□□ 0.91
ERCC3P19447 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC20.72■□□□□ 0.91
ERCC3P19447 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
ERCC3P19447 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC20.72■□□□□ 0.91
ERCC3P19447 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
ERCC3P19447 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
ERCC3P19447 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
ERCC3P19447 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
ERCC3P19447 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
ERCC3P19447 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
ERCC3P19447 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
ERCC3P19447 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
ERCC3P19447 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
ERCC3P19447 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms