Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
XRCC1P18887 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
XRCC1P18887 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
XRCC1P18887 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
XRCC1P18887 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC17.9■□□□□ 0.46
XRCC1P18887 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC17.9■□□□□ 0.46
XRCC1P18887 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC17.9■□□□□ 0.46
XRCC1P18887 BX276092.5-203ENST00000456199 560 ntBASIC17.9■□□□□ 0.46
XRCC1P18887 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC17.9■□□□□ 0.46
XRCC1P18887 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC17.9■□□□□ 0.46
XRCC1P18887 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC17.9■□□□□ 0.46
XRCC1P18887 AL121672.3-201ENST00000608644 468 ntBASIC17.9■□□□□ 0.46
XRCC1P18887 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
XRCC1P18887 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
XRCC1P18887 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
XRCC1P18887 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC17.9■□□□□ 0.46
XRCC1P18887 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
XRCC1P18887 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
XRCC1P18887 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC17.9■□□□□ 0.46
XRCC1P18887 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
XRCC1P18887 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
XRCC1P18887 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
XRCC1P18887 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
XRCC1P18887 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
XRCC1P18887 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
XRCC1P18887 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
XRCC1P18887 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC17.89■□□□□ 0.45
XRCC1P18887 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC17.89■□□□□ 0.45
XRCC1P18887 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
XRCC1P18887 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
XRCC1P18887 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
XRCC1P18887 MIR149-201ENST00000384879 89 ntBASIC17.89■□□□□ 0.45
XRCC1P18887 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
XRCC1P18887 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
XRCC1P18887 ATP5G2P1-201ENST00000433580 426 ntBASIC17.89■□□□□ 0.45
XRCC1P18887 KRT18P48-201ENST00000434763 852 ntBASIC17.89■□□□□ 0.45
XRCC1P18887 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC17.89■□□□□ 0.45
XRCC1P18887 KRT8P26-201ENST00000534154 1276 ntBASIC17.89■□□□□ 0.45
XRCC1P18887 METTL23-204ENST00000586752 904 ntTSL 2 BASIC17.89■□□□□ 0.45
XRCC1P18887 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC17.89■□□□□ 0.45
XRCC1P18887 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
XRCC1P18887 AC016734.2-201ENST00000624325 1377 ntBASIC17.89■□□□□ 0.45
XRCC1P18887 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC17.89■□□□□ 0.45
XRCC1P18887 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
XRCC1P18887 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
XRCC1P18887 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC17.89■□□□□ 0.45
XRCC1P18887 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
XRCC1P18887 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
XRCC1P18887 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
XRCC1P18887 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC17.88■□□□□ 0.45
XRCC1P18887 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC17.88■□□□□ 0.45
XRCC1P18887 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
XRCC1P18887 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC17.88■□□□□ 0.45
XRCC1P18887 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
XRCC1P18887 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC17.88■□□□□ 0.45
XRCC1P18887 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
XRCC1P18887 MYLKP1-201ENST00000509077 1580 ntBASIC17.88■□□□□ 0.45
XRCC1P18887 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
XRCC1P18887 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
XRCC1P18887 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
XRCC1P18887 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
XRCC1P18887 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
XRCC1P18887 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
XRCC1P18887 AP003733.1-201ENST00000491725 852 ntBASIC17.88■□□□□ 0.45
XRCC1P18887 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC17.88■□□□□ 0.45
XRCC1P18887 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC17.88■□□□□ 0.45
XRCC1P18887 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
XRCC1P18887 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC17.88■□□□□ 0.45
XRCC1P18887 RNF126P1-202ENST00000569893 925 ntBASIC17.88■□□□□ 0.45
XRCC1P18887 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC17.88■□□□□ 0.45
XRCC1P18887 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC17.88■□□□□ 0.45
XRCC1P18887 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC17.88■□□□□ 0.45
XRCC1P18887 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
XRCC1P18887 AC024563.2-201ENST00000603282 481 ntBASIC17.88■□□□□ 0.45
XRCC1P18887 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC17.88■□□□□ 0.45
XRCC1P18887 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
XRCC1P18887 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC17.88■□□□□ 0.45
XRCC1P18887 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC17.88■□□□□ 0.45
XRCC1P18887 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
XRCC1P18887 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC17.88■□□□□ 0.45
XRCC1P18887 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
XRCC1P18887 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
XRCC1P18887 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
XRCC1P18887 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
XRCC1P18887 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
XRCC1P18887 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
XRCC1P18887 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC17.88■□□□□ 0.45
XRCC1P18887 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
XRCC1P18887 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC17.88■□□□□ 0.45
XRCC1P18887 KRT89P-201ENST00000620027 1478 ntBASIC17.88■□□□□ 0.45
XRCC1P18887 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
XRCC1P18887 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
XRCC1P18887 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
XRCC1P18887 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
XRCC1P18887 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC17.87■□□□□ 0.45
XRCC1P18887 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
XRCC1P18887 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC17.87■□□□□ 0.45
XRCC1P18887 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC17.87■□□□□ 0.45
XRCC1P18887 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
XRCC1P18887 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 55.7 ms