Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
CXCL1P09341 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
CXCL1P09341 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC13.94□□□□□ -0.18
CXCL1P09341 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
CXCL1P09341 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC13.94□□□□□ -0.18
CXCL1P09341 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC13.94□□□□□ -0.18
CXCL1P09341 DBET-201ENST00000630918 3363 ntBASIC13.94□□□□□ -0.18
CXCL1P09341 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
CXCL1P09341 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CXCL1P09341 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CXCL1P09341 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CXCL1P09341 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC13.93□□□□□ -0.18
CXCL1P09341 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CXCL1P09341 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
CXCL1P09341 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
CXCL1P09341 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
CXCL1P09341 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC13.93□□□□□ -0.18
CXCL1P09341 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CXCL1P09341 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
CXCL1P09341 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC13.93□□□□□ -0.18
CXCL1P09341 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC13.93□□□□□ -0.18
CXCL1P09341 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CXCL1P09341 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CXCL1P09341 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CXCL1P09341 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CXCL1P09341 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC13.93□□□□□ -0.18
CXCL1P09341 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CXCL1P09341 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
CXCL1P09341 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CXCL1P09341 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC13.93□□□□□ -0.18
CXCL1P09341 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
CXCL1P09341 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC13.93□□□□□ -0.18
CXCL1P09341 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CXCL1P09341 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
CXCL1P09341 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CXCL1P09341 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CXCL1P09341 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CXCL1P09341 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CXCL1P09341 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
CXCL1P09341 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
CXCL1P09341 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC13.93□□□□□ -0.18
CXCL1P09341 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC13.93□□□□□ -0.18
CXCL1P09341 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CXCL1P09341 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CXCL1P09341 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
CXCL1P09341 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
CXCL1P09341 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CXCL1P09341 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CXCL1P09341 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
CXCL1P09341 AC079328.2-201ENST00000561241 3354 ntBASIC13.93□□□□□ -0.18
CXCL1P09341 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CXCL1P09341 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
CXCL1P09341 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CXCL1P09341 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
CXCL1P09341 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CXCL1P09341 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CXCL1P09341 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC13.93□□□□□ -0.18
CXCL1P09341 AC024909.3-201ENST00000611513 2257 ntBASIC13.93□□□□□ -0.18
CXCL1P09341 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC13.93□□□□□ -0.18
CXCL1P09341 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
CXCL1P09341 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC13.93□□□□□ -0.18
CXCL1P09341 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
CXCL1P09341 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
CXCL1P09341 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
CXCL1P09341 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
CXCL1P09341 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CXCL1P09341 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
CXCL1P09341 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CXCL1P09341 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CXCL1P09341 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC13.92□□□□□ -0.18
CXCL1P09341 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
CXCL1P09341 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
CXCL1P09341 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC13.92□□□□□ -0.18
CXCL1P09341 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CXCL1P09341 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
CXCL1P09341 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CXCL1P09341 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC13.92□□□□□ -0.18
CXCL1P09341 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CXCL1P09341 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
CXCL1P09341 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
CXCL1P09341 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC13.92□□□□□ -0.18
CXCL1P09341 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CXCL1P09341 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CXCL1P09341 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC13.92□□□□□ -0.18
CXCL1P09341 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
CXCL1P09341 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC13.92□□□□□ -0.18
CXCL1P09341 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
CXCL1P09341 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CXCL1P09341 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC13.92□□□□□ -0.18
CXCL1P09341 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC13.92□□□□□ -0.18
CXCL1P09341 ABHD17AP6-201ENST00000458502 1044 ntBASIC13.92□□□□□ -0.18
CXCL1P09341 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC13.92□□□□□ -0.18
CXCL1P09341 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC13.92□□□□□ -0.18
CXCL1P09341 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC13.92□□□□□ -0.18
CXCL1P09341 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CXCL1P09341 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC13.92□□□□□ -0.18
CXCL1P09341 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC13.92□□□□□ -0.18
CXCL1P09341 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CXCL1P09341 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC13.92□□□□□ -0.18
CXCL1P09341 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms