Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 ADM-208ENST00000534464 1640 ntTSL 2 BASIC17.45■□□□□ 0.38
HOXC4P09017 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC17.45■□□□□ 0.38
HOXC4P09017 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HOXC4P09017 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC17.45■□□□□ 0.38
HOXC4P09017 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC17.45■□□□□ 0.38
HOXC4P09017 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC17.45■□□□□ 0.38
HOXC4P09017 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC17.45■□□□□ 0.38
HOXC4P09017 REXO1L9P-201ENST00000604264 2108 ntBASIC17.45■□□□□ 0.38
HOXC4P09017 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HOXC4P09017 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC17.45■□□□□ 0.38
HOXC4P09017 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
HOXC4P09017 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HOXC4P09017 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HOXC4P09017 AL049757.1-201ENST00000616842 1596 ntBASIC17.45■□□□□ 0.38
HOXC4P09017 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HOXC4P09017 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC17.44■□□□□ 0.38
HOXC4P09017 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HOXC4P09017 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
HOXC4P09017 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC17.44■□□□□ 0.38
HOXC4P09017 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HOXC4P09017 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
HOXC4P09017 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC17.44■□□□□ 0.38
HOXC4P09017 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HOXC4P09017 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC17.44■□□□□ 0.38
HOXC4P09017 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC17.44■□□□□ 0.38
HOXC4P09017 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.44■□□□□ 0.38
HOXC4P09017 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HOXC4P09017 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC17.44■□□□□ 0.38
HOXC4P09017 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
HOXC4P09017 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC17.44■□□□□ 0.38
HOXC4P09017 AC093909.1-201ENST00000504731 1122 ntBASIC17.44■□□□□ 0.38
HOXC4P09017 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
HOXC4P09017 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC17.44■□□□□ 0.38
HOXC4P09017 NKAPP1-205ENST00000585790 367 ntBASIC17.44■□□□□ 0.38
HOXC4P09017 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
HOXC4P09017 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC17.44■□□□□ 0.38
HOXC4P09017 AC148477.8-201ENST00000624298 468 ntBASIC17.44■□□□□ 0.38
HOXC4P09017 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC17.44■□□□□ 0.38
HOXC4P09017 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC17.44■□□□□ 0.38
HOXC4P09017 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
HOXC4P09017 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HOXC4P09017 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HOXC4P09017 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
HOXC4P09017 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC17.44■□□□□ 0.38
HOXC4P09017 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HOXC4P09017 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC17.44■□□□□ 0.38
HOXC4P09017 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
HOXC4P09017 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HOXC4P09017 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HOXC4P09017 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HOXC4P09017 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HOXC4P09017 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
HOXC4P09017 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC17.43■□□□□ 0.38
HOXC4P09017 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HOXC4P09017 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HOXC4P09017 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
HOXC4P09017 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HOXC4P09017 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC17.43■□□□□ 0.38
HOXC4P09017 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HOXC4P09017 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC17.43■□□□□ 0.38
HOXC4P09017 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
HOXC4P09017 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
HOXC4P09017 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC17.43■□□□□ 0.38
HOXC4P09017 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC17.43■□□□□ 0.38
HOXC4P09017 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
HOXC4P09017 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC17.43■□□□□ 0.38
HOXC4P09017 FAM215A-202ENST00000632077 792 ntBASIC17.43■□□□□ 0.38
HOXC4P09017 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
HOXC4P09017 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC17.43■□□□□ 0.38
HOXC4P09017 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HOXC4P09017 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HOXC4P09017 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC17.43■□□□□ 0.38
HOXC4P09017 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC17.42■□□□□ 0.38
HOXC4P09017 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
HOXC4P09017 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
HOXC4P09017 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC17.42■□□□□ 0.38
HOXC4P09017 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC17.42■□□□□ 0.38
HOXC4P09017 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HOXC4P09017 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC17.42■□□□□ 0.38
HOXC4P09017 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
HOXC4P09017 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HOXC4P09017 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HOXC4P09017 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC17.42■□□□□ 0.38
HOXC4P09017 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
HOXC4P09017 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HOXC4P09017 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
HOXC4P09017 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC17.42■□□□□ 0.38
HOXC4P09017 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
HOXC4P09017 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC17.42■□□□□ 0.38
HOXC4P09017 PRKN-208ENST00000610470 531 ntTSL 2 BASIC17.42■□□□□ 0.38
HOXC4P09017 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC17.42■□□□□ 0.38
HOXC4P09017 PRKN-209ENST00000612485 225 ntTSL 5 BASIC17.42■□□□□ 0.38
HOXC4P09017 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
HOXC4P09017 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
HOXC4P09017 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HOXC4P09017 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC17.42■□□□□ 0.38
HOXC4P09017 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
HOXC4P09017 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
HOXC4P09017 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HOXC4P09017 AC100803.2-201ENST00000562459 1963 ntBASIC17.42■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms