Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
HLA-DOAP06340 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
HLA-DOAP06340 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC21.09■□□□□ 0.97
HLA-DOAP06340 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
HLA-DOAP06340 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC21.09■□□□□ 0.97
HLA-DOAP06340 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
HLA-DOAP06340 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
HLA-DOAP06340 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
HLA-DOAP06340 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC21.09■□□□□ 0.97
HLA-DOAP06340 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC21.09■□□□□ 0.97
HLA-DOAP06340 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
HLA-DOAP06340 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
HLA-DOAP06340 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
HLA-DOAP06340 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
HLA-DOAP06340 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
HLA-DOAP06340 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC21.08■□□□□ 0.97
HLA-DOAP06340 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
HLA-DOAP06340 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
HLA-DOAP06340 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC21.08■□□□□ 0.97
HLA-DOAP06340 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC21.08■□□□□ 0.97
HLA-DOAP06340 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
HLA-DOAP06340 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
HLA-DOAP06340 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
HLA-DOAP06340 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
HLA-DOAP06340 RAB17-203ENST00000409576 466 ntTSL 3 BASIC21.08■□□□□ 0.97
HLA-DOAP06340 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC21.08■□□□□ 0.97
HLA-DOAP06340 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
HLA-DOAP06340 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
HLA-DOAP06340 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC21.08■□□□□ 0.97
HLA-DOAP06340 AC138932.1-201ENST00000534164 6830 ntBASIC21.08■□□□□ 0.97
HLA-DOAP06340 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC21.08■□□□□ 0.97
HLA-DOAP06340 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC21.08■□□□□ 0.97
HLA-DOAP06340 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC21.08■□□□□ 0.97
HLA-DOAP06340 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC21.08■□□□□ 0.97
HLA-DOAP06340 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC21.08■□□□□ 0.97
HLA-DOAP06340 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC21.08■□□□□ 0.97
HLA-DOAP06340 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
HLA-DOAP06340 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
HLA-DOAP06340 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
HLA-DOAP06340 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
HLA-DOAP06340 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
HLA-DOAP06340 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
HLA-DOAP06340 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
HLA-DOAP06340 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
HLA-DOAP06340 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC21.07■□□□□ 0.96
HLA-DOAP06340 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC21.07■□□□□ 0.96
HLA-DOAP06340 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
HLA-DOAP06340 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
HLA-DOAP06340 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC21.07■□□□□ 0.96
HLA-DOAP06340 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC21.07■□□□□ 0.96
HLA-DOAP06340 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC21.07■□□□□ 0.96
HLA-DOAP06340 RPS2P1-201ENST00000434010 821 ntBASIC21.07■□□□□ 0.96
HLA-DOAP06340 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC21.07■□□□□ 0.96
HLA-DOAP06340 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC21.07■□□□□ 0.96
HLA-DOAP06340 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC21.07■□□□□ 0.96
HLA-DOAP06340 PAM16-208ENST00000573553 722 ntTSL 2 BASIC21.07■□□□□ 0.96
HLA-DOAP06340 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC21.07■□□□□ 0.96
HLA-DOAP06340 PNMT-203ENST00000581428 677 ntTSL 2 BASIC21.07■□□□□ 0.96
HLA-DOAP06340 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC21.07■□□□□ 0.96
HLA-DOAP06340 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC21.07■□□□□ 0.96
HLA-DOAP06340 USP49-202ENST00000373010 2446 ntTSL 5 BASIC21.07■□□□□ 0.96
HLA-DOAP06340 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC21.07■□□□□ 0.96
HLA-DOAP06340 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
HLA-DOAP06340 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC21.07■□□□□ 0.96
HLA-DOAP06340 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
HLA-DOAP06340 AC093677.2-201ENST00000600169 1863 ntBASIC21.07■□□□□ 0.96
HLA-DOAP06340 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC21.07■□□□□ 0.96
HLA-DOAP06340 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
HLA-DOAP06340 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
HLA-DOAP06340 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC21.06■□□□□ 0.96
HLA-DOAP06340 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC21.06■□□□□ 0.96
HLA-DOAP06340 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
HLA-DOAP06340 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
HLA-DOAP06340 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
HLA-DOAP06340 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
HLA-DOAP06340 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC21.06■□□□□ 0.96
HLA-DOAP06340 SLC25A1P1-201ENST00000528351 927 ntBASIC21.06■□□□□ 0.96
HLA-DOAP06340 OR7E14P-202ENST00000530490 1290 ntBASIC21.06■□□□□ 0.96
HLA-DOAP06340 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
HLA-DOAP06340 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC21.06■□□□□ 0.96
HLA-DOAP06340 NKAPP1-205ENST00000585790 367 ntBASIC21.06■□□□□ 0.96
HLA-DOAP06340 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC21.06■□□□□ 0.96
HLA-DOAP06340 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
HLA-DOAP06340 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
HLA-DOAP06340 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
HLA-DOAP06340 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC21.06■□□□□ 0.96
HLA-DOAP06340 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
HLA-DOAP06340 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
HLA-DOAP06340 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
HLA-DOAP06340 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
HLA-DOAP06340 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC21.06■□□□□ 0.96
HLA-DOAP06340 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
HLA-DOAP06340 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
HLA-DOAP06340 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
HLA-DOAP06340 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
HLA-DOAP06340 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
HLA-DOAP06340 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
HLA-DOAP06340 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC21.05■□□□□ 0.96
HLA-DOAP06340 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
HLA-DOAP06340 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC21.05■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms