Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
APOEP02649 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
APOEP02649 LINC00602-201ENST00000629776 2065 ntBASIC18.8■□□□□ 0.6
APOEP02649 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
APOEP02649 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
APOEP02649 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
APOEP02649 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
APOEP02649 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC18.8■□□□□ 0.6
APOEP02649 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC18.8■□□□□ 0.6
APOEP02649 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC18.8■□□□□ 0.6
APOEP02649 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
APOEP02649 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
APOEP02649 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
APOEP02649 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC18.8■□□□□ 0.6
APOEP02649 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC18.8■□□□□ 0.6
APOEP02649 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
APOEP02649 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
APOEP02649 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
APOEP02649 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
APOEP02649 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
APOEP02649 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
APOEP02649 CD276-203ENST00000537340 2439 ntTSL 2 BASIC18.8■□□□□ 0.6
APOEP02649 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
APOEP02649 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
APOEP02649 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC18.79■□□□□ 0.6
APOEP02649 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
APOEP02649 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
APOEP02649 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
APOEP02649 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC18.79■□□□□ 0.6
APOEP02649 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
APOEP02649 PHGDH-209ENST00000641074 1780 ntBASIC18.79■□□□□ 0.6
APOEP02649 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
APOEP02649 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
APOEP02649 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
APOEP02649 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
APOEP02649 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC18.79■□□□□ 0.6
APOEP02649 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
APOEP02649 IGHV3-41-201ENST00000613121 348 ntBASIC18.79■□□□□ 0.6
APOEP02649 ANKRD20A8P-203ENST00000641373 517 ntBASIC18.79■□□□□ 0.6
APOEP02649 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
APOEP02649 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
APOEP02649 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC18.79■□□□□ 0.6
APOEP02649 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
APOEP02649 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
APOEP02649 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
APOEP02649 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
APOEP02649 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
APOEP02649 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
APOEP02649 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
APOEP02649 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
APOEP02649 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
APOEP02649 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
APOEP02649 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
APOEP02649 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
APOEP02649 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
APOEP02649 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
APOEP02649 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
APOEP02649 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
APOEP02649 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
APOEP02649 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
APOEP02649 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC18.78■□□□□ 0.6
APOEP02649 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
APOEP02649 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
APOEP02649 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
APOEP02649 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
APOEP02649 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
APOEP02649 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
APOEP02649 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC18.78■□□□□ 0.6
APOEP02649 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
APOEP02649 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
APOEP02649 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC18.78■□□□□ 0.6
APOEP02649 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC18.78■□□□□ 0.6
APOEP02649 ATP5G2P1-201ENST00000433580 426 ntBASIC18.78■□□□□ 0.6
APOEP02649 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC18.78■□□□□ 0.6
APOEP02649 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC18.78■□□□□ 0.6
APOEP02649 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC18.78■□□□□ 0.6
APOEP02649 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
APOEP02649 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC18.78■□□□□ 0.6
APOEP02649 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
APOEP02649 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
APOEP02649 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
APOEP02649 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
APOEP02649 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
APOEP02649 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC18.78■□□□□ 0.6
APOEP02649 AC008764.6-201ENST00000595909 2069 ntBASIC18.78■□□□□ 0.6
APOEP02649 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC18.78■□□□□ 0.6
APOEP02649 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
APOEP02649 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
APOEP02649 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
APOEP02649 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
APOEP02649 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
APOEP02649 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
APOEP02649 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
APOEP02649 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
APOEP02649 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
APOEP02649 KRT18P1-202ENST00000452408 1331 ntBASIC18.77■□□□□ 0.6
APOEP02649 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
APOEP02649 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
APOEP02649 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
APOEP02649 LINC00167-201ENST00000530583 1419 ntBASIC18.77■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms