Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC17.56■□□□□ 0.4
SIX3O95343 AC080080.1-201ENST00000625121 2420 ntBASIC17.56■□□□□ 0.4
SIX3O95343 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SIX3O95343 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
SIX3O95343 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC17.55■□□□□ 0.4
SIX3O95343 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC17.55■□□□□ 0.4
SIX3O95343 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
SIX3O95343 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC17.55■□□□□ 0.4
SIX3O95343 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SIX3O95343 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
SIX3O95343 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SIX3O95343 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC17.55■□□□□ 0.4
SIX3O95343 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SIX3O95343 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC17.55■□□□□ 0.4
SIX3O95343 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC17.55■□□□□ 0.4
SIX3O95343 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
SIX3O95343 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SIX3O95343 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC17.55■□□□□ 0.4
SIX3O95343 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC17.55■□□□□ 0.4
SIX3O95343 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC17.55■□□□□ 0.4
SIX3O95343 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC17.55■□□□□ 0.4
SIX3O95343 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
SIX3O95343 CD81-212ENST00000526072 1172 ntTSL 5 BASIC17.55■□□□□ 0.4
SIX3O95343 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC17.55■□□□□ 0.4
SIX3O95343 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
SIX3O95343 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC17.55■□□□□ 0.4
SIX3O95343 HARS-201ENST00000307633 1780 ntTSL 2 BASIC17.55■□□□□ 0.4
SIX3O95343 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SIX3O95343 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
SIX3O95343 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC17.55■□□□□ 0.4
SIX3O95343 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
SIX3O95343 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SIX3O95343 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC17.55■□□□□ 0.4
SIX3O95343 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
SIX3O95343 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SIX3O95343 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SIX3O95343 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SIX3O95343 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SIX3O95343 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SIX3O95343 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC17.54■□□□□ 0.4
SIX3O95343 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC17.54■□□□□ 0.4
SIX3O95343 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
SIX3O95343 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC17.54■□□□□ 0.4
SIX3O95343 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
SIX3O95343 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC17.54■□□□□ 0.4
SIX3O95343 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SIX3O95343 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
SIX3O95343 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
SIX3O95343 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SIX3O95343 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SIX3O95343 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC17.54■□□□□ 0.4
SIX3O95343 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC17.54■□□□□ 0.4
SIX3O95343 SLC25A3P1-201ENST00000443844 931 ntBASIC17.54■□□□□ 0.4
SIX3O95343 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC17.54■□□□□ 0.4
SIX3O95343 AC010203.1-204ENST00000548782 407 ntBASIC17.54■□□□□ 0.4
SIX3O95343 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC17.54■□□□□ 0.4
SIX3O95343 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC17.54■□□□□ 0.4
SIX3O95343 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC17.54■□□□□ 0.4
SIX3O95343 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC17.54■□□□□ 0.4
SIX3O95343 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
SIX3O95343 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
SIX3O95343 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SIX3O95343 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC17.54■□□□□ 0.4
SIX3O95343 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SIX3O95343 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SIX3O95343 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC17.54■□□□□ 0.4
SIX3O95343 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SIX3O95343 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SIX3O95343 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SIX3O95343 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC17.53■□□□□ 0.4
SIX3O95343 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC17.53■□□□□ 0.4
SIX3O95343 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
SIX3O95343 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SIX3O95343 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SIX3O95343 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC17.53■□□□□ 0.4
SIX3O95343 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SIX3O95343 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SIX3O95343 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SIX3O95343 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
SIX3O95343 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
SIX3O95343 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SIX3O95343 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SIX3O95343 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC17.53■□□□□ 0.4
SIX3O95343 ARL16-209ENST00000573715 763 ntTSL 3 BASIC17.53■□□□□ 0.4
SIX3O95343 ARL16-211ENST00000576135 694 ntTSL 3 BASIC17.53■□□□□ 0.4
SIX3O95343 TK1-205ENST00000590862 642 ntTSL 3 BASIC17.53■□□□□ 0.4
SIX3O95343 AC008687.5-201ENST00000593746 558 ntBASIC17.53■□□□□ 0.4
SIX3O95343 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
SIX3O95343 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SIX3O95343 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC17.53■□□□□ 0.4
SIX3O95343 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SIX3O95343 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC17.52■□□□□ 0.4
SIX3O95343 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC17.52■□□□□ 0.4
SIX3O95343 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SIX3O95343 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC17.52■□□□□ 0.4
SIX3O95343 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
SIX3O95343 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SIX3O95343 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SIX3O95343 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
SIX3O95343 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms