Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
LMX1BO60663 CLN6-214ENST00000636314 442 ntTSL 3 BASIC15.8■□□□□ 0.12
LMX1BO60663 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LMX1BO60663 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
LMX1BO60663 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC15.8■□□□□ 0.12
LMX1BO60663 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LMX1BO60663 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
LMX1BO60663 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC15.8■□□□□ 0.12
LMX1BO60663 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LMX1BO60663 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LMX1BO60663 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
LMX1BO60663 CEP83-AS1-201ENST00000623122 2482 ntBASIC15.79■□□□□ 0.12
LMX1BO60663 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
LMX1BO60663 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
LMX1BO60663 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
LMX1BO60663 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
LMX1BO60663 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
LMX1BO60663 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
LMX1BO60663 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
LMX1BO60663 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
LMX1BO60663 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
LMX1BO60663 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
LMX1BO60663 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
LMX1BO60663 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
LMX1BO60663 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
LMX1BO60663 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
LMX1BO60663 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC15.79■□□□□ 0.12
LMX1BO60663 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC15.79■□□□□ 0.12
LMX1BO60663 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
LMX1BO60663 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC15.79■□□□□ 0.12
LMX1BO60663 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
LMX1BO60663 ILF2-202ENST00000368681 726 ntTSL 2 BASIC15.79■□□□□ 0.12
LMX1BO60663 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
LMX1BO60663 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
LMX1BO60663 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
LMX1BO60663 PHB2-202ENST00000440277 996 ntTSL 5 BASIC15.79■□□□□ 0.12
LMX1BO60663 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
LMX1BO60663 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC15.79■□□□□ 0.12
LMX1BO60663 AL136038.3-201ENST00000561909 1096 ntBASIC15.79■□□□□ 0.12
LMX1BO60663 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC15.79■□□□□ 0.12
LMX1BO60663 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
LMX1BO60663 AL691432.3-201ENST00000621860 400 ntBASIC15.79■□□□□ 0.12
LMX1BO60663 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
LMX1BO60663 VPS72-207ENST00000640458 689 ntTSL 5 BASIC15.79■□□□□ 0.12
LMX1BO60663 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
LMX1BO60663 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
LMX1BO60663 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
LMX1BO60663 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC15.79■□□□□ 0.12
LMX1BO60663 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC15.79■□□□□ 0.12
LMX1BO60663 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
LMX1BO60663 AC090340.1-201ENST00000620778 4980 ntBASIC15.79■□□□□ 0.12
LMX1BO60663 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
LMX1BO60663 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC15.79■□□□□ 0.12
LMX1BO60663 AL645608.8-201ENST00000606034 2086 ntBASIC15.79■□□□□ 0.12
LMX1BO60663 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
LMX1BO60663 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
LMX1BO60663 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
LMX1BO60663 AL024508.2-201ENST00000607749 1894 ntBASIC15.78■□□□□ 0.12
LMX1BO60663 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC15.78■□□□□ 0.12
LMX1BO60663 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
LMX1BO60663 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
LMX1BO60663 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC15.78■□□□□ 0.12
LMX1BO60663 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
LMX1BO60663 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC15.78■□□□□ 0.12
LMX1BO60663 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
LMX1BO60663 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
LMX1BO60663 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC15.78■□□□□ 0.12
LMX1BO60663 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
LMX1BO60663 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
LMX1BO60663 KRT18P38-201ENST00000449496 1282 ntBASIC15.78■□□□□ 0.12
LMX1BO60663 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC15.78■□□□□ 0.12
LMX1BO60663 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC15.78■□□□□ 0.12
LMX1BO60663 CLEC4GP1-201ENST00000596555 870 ntBASIC15.78■□□□□ 0.12
LMX1BO60663 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC15.78■□□□□ 0.12
LMX1BO60663 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
LMX1BO60663 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
LMX1BO60663 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
LMX1BO60663 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
LMX1BO60663 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
LMX1BO60663 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
LMX1BO60663 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
LMX1BO60663 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC15.78■□□□□ 0.12
LMX1BO60663 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
LMX1BO60663 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC15.78■□□□□ 0.12
LMX1BO60663 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
LMX1BO60663 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
LMX1BO60663 AC020916.1-201ENST00000587762 1774 ntBASIC15.77■□□□□ 0.12
LMX1BO60663 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
LMX1BO60663 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC15.77■□□□□ 0.12
LMX1BO60663 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
LMX1BO60663 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
LMX1BO60663 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
LMX1BO60663 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC15.77■□□□□ 0.12
LMX1BO60663 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC15.77■□□□□ 0.12
LMX1BO60663 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
LMX1BO60663 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
LMX1BO60663 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC15.77■□□□□ 0.12
LMX1BO60663 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
LMX1BO60663 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
LMX1BO60663 BET1L-202ENST00000332865 533 ntTSL 5 BASIC15.77■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms