Protein–RNA interactions for Protein: O43633

CHMP2A, Charged multivesicular body protein 2a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2AO43633 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CHMP2AO43633 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC20.17■□□□□ 0.82
CHMP2AO43633 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC20.17■□□□□ 0.82
CHMP2AO43633 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CHMP2AO43633 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CHMP2AO43633 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CHMP2AO43633 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CHMP2AO43633 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC20.17■□□□□ 0.82
CHMP2AO43633 AC096582.2-201ENST00000510860 516 ntBASIC20.17■□□□□ 0.82
CHMP2AO43633 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CHMP2AO43633 SDHD-206ENST00000528182 754 ntTSL 3 BASIC20.17■□□□□ 0.82
CHMP2AO43633 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC20.17■□□□□ 0.82
CHMP2AO43633 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
CHMP2AO43633 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC20.17■□□□□ 0.82
CHMP2AO43633 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CHMP2AO43633 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
CHMP2AO43633 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CHMP2AO43633 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CHMP2AO43633 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CHMP2AO43633 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
CHMP2AO43633 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CHMP2AO43633 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
CHMP2AO43633 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
CHMP2AO43633 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CHMP2AO43633 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CHMP2AO43633 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC20.16■□□□□ 0.82
CHMP2AO43633 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC20.16■□□□□ 0.82
CHMP2AO43633 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CHMP2AO43633 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
CHMP2AO43633 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
CHMP2AO43633 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
CHMP2AO43633 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC20.16■□□□□ 0.82
CHMP2AO43633 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CHMP2AO43633 ABALON-201ENST00000629058 1903 ntBASIC20.16■□□□□ 0.82
CHMP2AO43633 AC100803.2-201ENST00000562459 1963 ntBASIC20.16■□□□□ 0.82
CHMP2AO43633 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC20.16■□□□□ 0.82
CHMP2AO43633 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CHMP2AO43633 STK4-201ENST00000372801 2038 ntTSL 2 BASIC20.16■□□□□ 0.82
CHMP2AO43633 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CHMP2AO43633 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CHMP2AO43633 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CHMP2AO43633 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC20.16■□□□□ 0.82
CHMP2AO43633 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC20.16■□□□□ 0.82
CHMP2AO43633 AL450487.1-201ENST00000426799 995 ntBASIC20.16■□□□□ 0.82
CHMP2AO43633 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC20.16■□□□□ 0.82
CHMP2AO43633 NUS1P1-201ENST00000446295 882 ntBASIC20.16■□□□□ 0.82
CHMP2AO43633 CDV3-207ENST00000508481 661 ntTSL 3 BASIC20.16■□□□□ 0.82
CHMP2AO43633 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
CHMP2AO43633 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC20.16■□□□□ 0.82
CHMP2AO43633 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CHMP2AO43633 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CHMP2AO43633 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
CHMP2AO43633 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC20.16■□□□□ 0.82
CHMP2AO43633 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC20.16■□□□□ 0.82
CHMP2AO43633 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CHMP2AO43633 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
CHMP2AO43633 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
CHMP2AO43633 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CHMP2AO43633 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CHMP2AO43633 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
CHMP2AO43633 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CHMP2AO43633 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CHMP2AO43633 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC20.15■□□□□ 0.82
CHMP2AO43633 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CHMP2AO43633 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC20.15■□□□□ 0.82
CHMP2AO43633 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CHMP2AO43633 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC20.15■□□□□ 0.82
CHMP2AO43633 CD276-201ENST00000318424 2738 ntTSL 5 BASIC20.15■□□□□ 0.82
CHMP2AO43633 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CHMP2AO43633 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CHMP2AO43633 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CHMP2AO43633 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC20.15■□□□□ 0.82
CHMP2AO43633 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC20.15■□□□□ 0.82
CHMP2AO43633 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CHMP2AO43633 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC20.15■□□□□ 0.82
CHMP2AO43633 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC20.15■□□□□ 0.82
CHMP2AO43633 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC20.15■□□□□ 0.82
CHMP2AO43633 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC20.15■□□□□ 0.82
CHMP2AO43633 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC20.15■□□□□ 0.82
CHMP2AO43633 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CHMP2AO43633 KRT8P47-201ENST00000604727 1398 ntBASIC20.15■□□□□ 0.82
CHMP2AO43633 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CHMP2AO43633 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CHMP2AO43633 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
CHMP2AO43633 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CHMP2AO43633 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC20.15■□□□□ 0.82
CHMP2AO43633 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CHMP2AO43633 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC20.15■□□□□ 0.82
CHMP2AO43633 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CHMP2AO43633 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CHMP2AO43633 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC20.15■□□□□ 0.82
CHMP2AO43633 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC20.15■□□□□ 0.82
CHMP2AO43633 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CHMP2AO43633 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
CHMP2AO43633 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
CHMP2AO43633 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CHMP2AO43633 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CHMP2AO43633 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CHMP2AO43633 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CHMP2AO43633 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC20.14■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms