Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CLDN3O15551 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CLDN3O15551 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
CLDN3O15551 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CLDN3O15551 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC19.6■□□□□ 0.73
CLDN3O15551 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC19.6■□□□□ 0.73
CLDN3O15551 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CLDN3O15551 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
CLDN3O15551 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
CLDN3O15551 NOC2LP1-202ENST00000452600 2235 ntBASIC19.6■□□□□ 0.73
CLDN3O15551 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CLDN3O15551 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC19.6■□□□□ 0.73
CLDN3O15551 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CLDN3O15551 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC19.6■□□□□ 0.73
CLDN3O15551 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
CLDN3O15551 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
CLDN3O15551 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
CLDN3O15551 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC19.59■□□□□ 0.73
CLDN3O15551 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC19.59■□□□□ 0.73
CLDN3O15551 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CLDN3O15551 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
CLDN3O15551 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
CLDN3O15551 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CLDN3O15551 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CLDN3O15551 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC19.59■□□□□ 0.73
CLDN3O15551 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CLDN3O15551 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CLDN3O15551 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CLDN3O15551 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CLDN3O15551 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CLDN3O15551 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CLDN3O15551 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CLDN3O15551 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CLDN3O15551 IPPK-202ENST00000375522 882 ntTSL 3 BASIC19.59■□□□□ 0.73
CLDN3O15551 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
CLDN3O15551 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CLDN3O15551 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC19.59■□□□□ 0.73
CLDN3O15551 IGHV3-47-201ENST00000425060 335 ntBASIC19.59■□□□□ 0.73
CLDN3O15551 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CLDN3O15551 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CLDN3O15551 PNN-202ENST00000553331 656 ntTSL 3 BASIC19.59■□□□□ 0.73
CLDN3O15551 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CLDN3O15551 PRR29-207ENST00000580752 458 ntTSL 3 BASIC19.59■□□□□ 0.73
CLDN3O15551 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC19.59■□□□□ 0.73
CLDN3O15551 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CLDN3O15551 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
CLDN3O15551 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CLDN3O15551 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
CLDN3O15551 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CLDN3O15551 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CLDN3O15551 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
CLDN3O15551 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CLDN3O15551 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CLDN3O15551 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CLDN3O15551 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
CLDN3O15551 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
CLDN3O15551 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CLDN3O15551 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CLDN3O15551 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
CLDN3O15551 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CLDN3O15551 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
CLDN3O15551 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC19.58■□□□□ 0.73
CLDN3O15551 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC19.58■□□□□ 0.73
CLDN3O15551 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CLDN3O15551 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
CLDN3O15551 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC19.58■□□□□ 0.72
CLDN3O15551 NUS1P1-201ENST00000446295 882 ntBASIC19.58■□□□□ 0.72
CLDN3O15551 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC19.58■□□□□ 0.72
CLDN3O15551 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC19.58■□□□□ 0.72
CLDN3O15551 PRELID1P1-202ENST00000567272 903 ntBASIC19.58■□□□□ 0.72
CLDN3O15551 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC19.58■□□□□ 0.72
CLDN3O15551 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC19.58■□□□□ 0.72
CLDN3O15551 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC19.58■□□□□ 0.72
CLDN3O15551 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
CLDN3O15551 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CLDN3O15551 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CLDN3O15551 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC19.58■□□□□ 0.72
CLDN3O15551 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC19.58■□□□□ 0.72
CLDN3O15551 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
CLDN3O15551 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CLDN3O15551 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CLDN3O15551 PXK-206ENST00000463280 2825 ntTSL 2 BASIC19.57■□□□□ 0.72
CLDN3O15551 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CLDN3O15551 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CLDN3O15551 LETM1P2-201ENST00000597330 2178 ntBASIC19.57■□□□□ 0.72
CLDN3O15551 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
CLDN3O15551 NSUN5P1-202ENST00000421140 1535 ntBASIC19.57■□□□□ 0.72
CLDN3O15551 NSUN5P2-203ENST00000457352 1529 ntBASIC19.57■□□□□ 0.72
CLDN3O15551 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
CLDN3O15551 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC19.57■□□□□ 0.72
CLDN3O15551 CD276-201ENST00000318424 2738 ntTSL 5 BASIC19.57■□□□□ 0.72
CLDN3O15551 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CLDN3O15551 AP000997.3-201ENST00000623333 2250 ntBASIC19.57■□□□□ 0.72
CLDN3O15551 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
CLDN3O15551 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC19.57■□□□□ 0.72
CLDN3O15551 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CLDN3O15551 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC19.57■□□□□ 0.72
CLDN3O15551 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CLDN3O15551 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CLDN3O15551 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms