Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC22.56■■□□□ 1.2
NPHP1O15259 AC105339.3-201ENST00000560043 636 ntBASIC22.56■■□□□ 1.2
NPHP1O15259 AC055717.3-201ENST00000622967 595 ntBASIC22.56■■□□□ 1.2
NPHP1O15259 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC22.56■■□□□ 1.2
NPHP1O15259 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC22.56■■□□□ 1.2
NPHP1O15259 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC22.56■■□□□ 1.2
NPHP1O15259 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
NPHP1O15259 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC22.56■■□□□ 1.2
NPHP1O15259 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC22.56■■□□□ 1.2
NPHP1O15259 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
NPHP1O15259 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC22.56■■□□□ 1.2
NPHP1O15259 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
NPHP1O15259 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC22.56■■□□□ 1.2
NPHP1O15259 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC22.55■■□□□ 1.2
NPHP1O15259 PKD1P1-201ENST00000458669 6805 ntBASIC22.55■■□□□ 1.2
NPHP1O15259 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC22.55■■□□□ 1.2
NPHP1O15259 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
NPHP1O15259 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
NPHP1O15259 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
NPHP1O15259 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
NPHP1O15259 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
NPHP1O15259 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
NPHP1O15259 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
NPHP1O15259 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
NPHP1O15259 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
NPHP1O15259 LBH-204ENST00000406087 559 ntTSL 4 BASIC22.55■■□□□ 1.2
NPHP1O15259 NMU-202ENST00000505262 693 ntTSL 3 BASIC22.55■■□□□ 1.2
NPHP1O15259 AC112698.1-201ENST00000510299 916 ntBASIC22.55■■□□□ 1.2
NPHP1O15259 RNA5SP416-201ENST00000516838 111 ntBASIC22.55■■□□□ 1.2
NPHP1O15259 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC22.55■■□□□ 1.2
NPHP1O15259 NKAPP1-205ENST00000585790 367 ntBASIC22.55■■□□□ 1.2
NPHP1O15259 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
NPHP1O15259 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC22.55■■□□□ 1.2
NPHP1O15259 AL139424.1-201ENST00000607572 797 ntBASIC22.55■■□□□ 1.2
NPHP1O15259 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
NPHP1O15259 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC22.55■■□□□ 1.2
NPHP1O15259 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC22.55■■□□□ 1.2
NPHP1O15259 AC079781.4-201ENST00000641908 219 ntBASIC22.55■■□□□ 1.2
NPHP1O15259 LINC01126-201ENST00000623515 1646 ntBASIC22.55■■□□□ 1.2
NPHP1O15259 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
NPHP1O15259 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC22.55■■□□□ 1.2
NPHP1O15259 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC22.55■■□□□ 1.2
NPHP1O15259 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
NPHP1O15259 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC22.55■■□□□ 1.2
NPHP1O15259 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
NPHP1O15259 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC22.55■■□□□ 1.2
NPHP1O15259 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC22.55■■□□□ 1.2
NPHP1O15259 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
NPHP1O15259 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
NPHP1O15259 HR-201ENST00000312841 5351 ntTSL 5 BASIC22.54■■□□□ 1.2
NPHP1O15259 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC22.54■■□□□ 1.2
NPHP1O15259 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
NPHP1O15259 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC22.54■■□□□ 1.2
NPHP1O15259 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
NPHP1O15259 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC22.54■■□□□ 1.2
NPHP1O15259 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
NPHP1O15259 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
NPHP1O15259 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC22.54■■□□□ 1.2
NPHP1O15259 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC22.54■■□□□ 1.2
NPHP1O15259 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
NPHP1O15259 SNCG-201ENST00000348795 684 ntTSL 2 BASIC22.54■■□□□ 1.2
NPHP1O15259 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC22.54■■□□□ 1.2
NPHP1O15259 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
NPHP1O15259 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
NPHP1O15259 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
NPHP1O15259 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC22.54■■□□□ 1.2
NPHP1O15259 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC22.54■■□□□ 1.2
NPHP1O15259 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
NPHP1O15259 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC22.54■■□□□ 1.2
NPHP1O15259 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
NPHP1O15259 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC22.54■■□□□ 1.2
NPHP1O15259 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
NPHP1O15259 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC22.53■■□□□ 1.2
NPHP1O15259 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC22.53■■□□□ 1.2
NPHP1O15259 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC22.53■■□□□ 1.2
NPHP1O15259 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
NPHP1O15259 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC22.53■■□□□ 1.2
NPHP1O15259 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC22.53■■□□□ 1.2
NPHP1O15259 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC22.53■■□□□ 1.2
NPHP1O15259 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC22.53■■□□□ 1.2
NPHP1O15259 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
NPHP1O15259 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC22.53■■□□□ 1.2
NPHP1O15259 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC22.53■■□□□ 1.2
NPHP1O15259 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
NPHP1O15259 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC22.53■■□□□ 1.2
NPHP1O15259 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
NPHP1O15259 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
NPHP1O15259 SOD2-201ENST00000337404 991 ntTSL 2 BASIC22.53■■□□□ 1.2
NPHP1O15259 AC007967.2-201ENST00000432613 625 ntBASIC22.53■■□□□ 1.2
NPHP1O15259 DNAJB3-201ENST00000446806 729 ntBASIC22.53■■□□□ 1.2
NPHP1O15259 AC040169.1-201ENST00000565382 521 ntBASIC22.53■■□□□ 1.2
NPHP1O15259 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC22.53■■□□□ 1.2
NPHP1O15259 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC22.53■■□□□ 1.2
NPHP1O15259 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
NPHP1O15259 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.2
NPHP1O15259 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
NPHP1O15259 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
NPHP1O15259 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
NPHP1O15259 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
NPHP1O15259 COBL-210ENST00000632460 1941 ntTSL 5 BASIC22.53■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms