Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PCDHGA1Q9Y5H4 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PCDHGA1Q9Y5H4 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PCDHGA1Q9Y5H4 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC17.23■□□□□ 0.35
PCDHGA1Q9Y5H4 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
PCDHGA1Q9Y5H4 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
PCDHGA1Q9Y5H4 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC17.22■□□□□ 0.35
PCDHGA1Q9Y5H4 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
PCDHGA1Q9Y5H4 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
PCDHGA1Q9Y5H4 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
PCDHGA1Q9Y5H4 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC17.22■□□□□ 0.35
PCDHGA1Q9Y5H4 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PCDHGA1Q9Y5H4 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC17.22■□□□□ 0.35
PCDHGA1Q9Y5H4 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC17.22■□□□□ 0.35
PCDHGA1Q9Y5H4 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PCDHGA1Q9Y5H4 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
PCDHGA1Q9Y5H4 LBH-203ENST00000404397 543 ntTSL 4 BASIC17.22■□□□□ 0.35
PCDHGA1Q9Y5H4 MCCD1P2-201ENST00000423228 335 ntBASIC17.22■□□□□ 0.35
PCDHGA1Q9Y5H4 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC17.22■□□□□ 0.35
PCDHGA1Q9Y5H4 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC17.22■□□□□ 0.35
PCDHGA1Q9Y5H4 AC064836.3-201ENST00000607928 673 ntBASIC17.22■□□□□ 0.35
PCDHGA1Q9Y5H4 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PCDHGA1Q9Y5H4 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PCDHGA1Q9Y5H4 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC17.22■□□□□ 0.35
PCDHGA1Q9Y5H4 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC17.22■□□□□ 0.35
PCDHGA1Q9Y5H4 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
PCDHGA1Q9Y5H4 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
PCDHGA1Q9Y5H4 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PCDHGA1Q9Y5H4 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PCDHGA1Q9Y5H4 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
PCDHGA1Q9Y5H4 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC17.21■□□□□ 0.35
PCDHGA1Q9Y5H4 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
PCDHGA1Q9Y5H4 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
PCDHGA1Q9Y5H4 AL158211.5-201ENST00000623583 2518 ntBASIC17.21■□□□□ 0.35
PCDHGA1Q9Y5H4 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
PCDHGA1Q9Y5H4 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
PCDHGA1Q9Y5H4 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
PCDHGA1Q9Y5H4 MED29-202ENST00000594368 1471 ntTSL 2 BASIC17.21■□□□□ 0.35
PCDHGA1Q9Y5H4 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
PCDHGA1Q9Y5H4 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
PCDHGA1Q9Y5H4 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC17.21■□□□□ 0.35
PCDHGA1Q9Y5H4 METTL26-205ENST00000397666 726 ntTSL 2 BASIC17.21■□□□□ 0.35
PCDHGA1Q9Y5H4 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC17.21■□□□□ 0.35
PCDHGA1Q9Y5H4 AC023274.1-201ENST00000418278 595 ntBASIC17.21■□□□□ 0.35
PCDHGA1Q9Y5H4 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC17.21■□□□□ 0.35
PCDHGA1Q9Y5H4 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
PCDHGA1Q9Y5H4 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC17.21■□□□□ 0.35
PCDHGA1Q9Y5H4 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC17.21■□□□□ 0.35
PCDHGA1Q9Y5H4 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PCDHGA1Q9Y5H4 LINC01126-201ENST00000623515 1646 ntBASIC17.21■□□□□ 0.35
PCDHGA1Q9Y5H4 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC17.21■□□□□ 0.34
PCDHGA1Q9Y5H4 TBC1D3P5-201ENST00000579401 1545 ntBASIC17.21■□□□□ 0.34
PCDHGA1Q9Y5H4 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.34
PCDHGA1Q9Y5H4 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
PCDHGA1Q9Y5H4 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.34
PCDHGA1Q9Y5H4 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.34
PCDHGA1Q9Y5H4 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.34
PCDHGA1Q9Y5H4 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PCDHGA1Q9Y5H4 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC17.2■□□□□ 0.34
PCDHGA1Q9Y5H4 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC17.2■□□□□ 0.34
PCDHGA1Q9Y5H4 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC17.2■□□□□ 0.34
PCDHGA1Q9Y5H4 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PCDHGA1Q9Y5H4 PMPCAP1-201ENST00000508114 1576 ntBASIC17.2■□□□□ 0.34
PCDHGA1Q9Y5H4 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC17.2■□□□□ 0.34
PCDHGA1Q9Y5H4 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PCDHGA1Q9Y5H4 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
PCDHGA1Q9Y5H4 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC17.2■□□□□ 0.34
PCDHGA1Q9Y5H4 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PCDHGA1Q9Y5H4 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC17.2■□□□□ 0.34
PCDHGA1Q9Y5H4 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PCDHGA1Q9Y5H4 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
PCDHGA1Q9Y5H4 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC17.2■□□□□ 0.34
PCDHGA1Q9Y5H4 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC17.2■□□□□ 0.34
PCDHGA1Q9Y5H4 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PCDHGA1Q9Y5H4 AC136632.2-201ENST00000512891 861 ntBASIC17.2■□□□□ 0.34
PCDHGA1Q9Y5H4 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC17.2■□□□□ 0.34
PCDHGA1Q9Y5H4 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC17.2■□□□□ 0.34
PCDHGA1Q9Y5H4 COX5A-206ENST00000568783 571 ntTSL 3 BASIC17.2■□□□□ 0.34
PCDHGA1Q9Y5H4 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC17.2■□□□□ 0.34
PCDHGA1Q9Y5H4 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC17.2■□□□□ 0.34
PCDHGA1Q9Y5H4 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
PCDHGA1Q9Y5H4 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PCDHGA1Q9Y5H4 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
PCDHGA1Q9Y5H4 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC17.2■□□□□ 0.34
PCDHGA1Q9Y5H4 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC17.2■□□□□ 0.34
PCDHGA1Q9Y5H4 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC17.2■□□□□ 0.34
PCDHGA1Q9Y5H4 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC17.2■□□□□ 0.34
PCDHGA1Q9Y5H4 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PCDHGA1Q9Y5H4 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
PCDHGA1Q9Y5H4 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PCDHGA1Q9Y5H4 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PCDHGA1Q9Y5H4 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
PCDHGA1Q9Y5H4 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
PCDHGA1Q9Y5H4 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
PCDHGA1Q9Y5H4 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PCDHGA1Q9Y5H4 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
PCDHGA1Q9Y5H4 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC17.19■□□□□ 0.34
PCDHGA1Q9Y5H4 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PCDHGA1Q9Y5H4 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
PCDHGA1Q9Y5H4 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms