Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC33.95■■■■□ 3.03
SHROOM4Q9ULL8 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC33.95■■■■□ 3.03
SHROOM4Q9ULL8 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC33.95■■■■□ 3.03
SHROOM4Q9ULL8 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC33.95■■■■□ 3.03
SHROOM4Q9ULL8 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC33.95■■■■□ 3.03
SHROOM4Q9ULL8 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC33.95■■■■□ 3.03
SHROOM4Q9ULL8 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC33.95■■■■□ 3.02
SHROOM4Q9ULL8 ATP6V0CP3-201ENST00000417255 467 ntBASIC33.95■■■■□ 3.02
SHROOM4Q9ULL8 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC33.95■■■■□ 3.02
SHROOM4Q9ULL8 AC244107.1-201ENST00000442033 332 ntBASIC33.95■■■■□ 3.02
SHROOM4Q9ULL8 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC33.95■■■■□ 3.02
SHROOM4Q9ULL8 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC33.95■■■■□ 3.02
SHROOM4Q9ULL8 LHX6-205ENST00000464484 666 ntTSL 2 BASIC33.95■■■■□ 3.02
SHROOM4Q9ULL8 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC33.95■■■■□ 3.02
SHROOM4Q9ULL8 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC33.95■■■■□ 3.02
SHROOM4Q9ULL8 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC33.95■■■■□ 3.02
SHROOM4Q9ULL8 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC33.94■■■■□ 3.02
SHROOM4Q9ULL8 AP000974.1-201ENST00000623909 2387 ntBASIC33.94■■■■□ 3.02
SHROOM4Q9ULL8 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC33.94■■■■□ 3.02
SHROOM4Q9ULL8 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC33.94■■■■□ 3.02
SHROOM4Q9ULL8 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC33.94■■■■□ 3.02
SHROOM4Q9ULL8 MIR770-201ENST00000390219 98 ntBASIC33.94■■■■□ 3.02
SHROOM4Q9ULL8 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC33.94■■■■□ 3.02
SHROOM4Q9ULL8 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC33.94■■■■□ 3.02
SHROOM4Q9ULL8 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC33.94■■■■□ 3.02
SHROOM4Q9ULL8 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC33.94■■■■□ 3.02
SHROOM4Q9ULL8 AP002472.1-201ENST00000577490 586 ntBASIC33.94■■■■□ 3.02
SHROOM4Q9ULL8 MIR4469-201ENST00000583919 79 ntBASIC33.94■■■■□ 3.02
SHROOM4Q9ULL8 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC33.94■■■■□ 3.02
SHROOM4Q9ULL8 PGM5P2-202ENST00000637225 1043 ntBASIC33.94■■■■□ 3.02
SHROOM4Q9ULL8 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC33.93■■■■□ 3.02
SHROOM4Q9ULL8 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC33.93■■■■□ 3.02
SHROOM4Q9ULL8 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC33.93■■■■□ 3.02
SHROOM4Q9ULL8 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC33.93■■■■□ 3.02
SHROOM4Q9ULL8 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC33.93■■■■□ 3.02
SHROOM4Q9ULL8 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC33.93■■■■□ 3.02
SHROOM4Q9ULL8 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC33.93■■■■□ 3.02
SHROOM4Q9ULL8 AC073621.1-201ENST00000392730 636 ntBASIC33.93■■■■□ 3.02
SHROOM4Q9ULL8 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC33.93■■■■□ 3.02
SHROOM4Q9ULL8 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC33.93■■■■□ 3.02
SHROOM4Q9ULL8 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC33.93■■■■□ 3.02
SHROOM4Q9ULL8 AC073592.4-201ENST00000623827 446 ntBASIC33.93■■■■□ 3.02
SHROOM4Q9ULL8 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC33.92■■■■□ 3.02
SHROOM4Q9ULL8 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC33.92■■■■□ 3.02
SHROOM4Q9ULL8 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC33.92■■■■□ 3.02
SHROOM4Q9ULL8 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC33.92■■■■□ 3.02
SHROOM4Q9ULL8 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC33.92■■■■□ 3.02
SHROOM4Q9ULL8 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC33.92■■■■□ 3.02
SHROOM4Q9ULL8 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC33.92■■■■□ 3.02
SHROOM4Q9ULL8 CNN2P11-201ENST00000429351 262 ntBASIC33.92■■■■□ 3.02
SHROOM4Q9ULL8 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC33.92■■■■□ 3.02
SHROOM4Q9ULL8 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC33.92■■■■□ 3.02
SHROOM4Q9ULL8 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC33.92■■■■□ 3.02
SHROOM4Q9ULL8 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC33.92■■■■□ 3.02
SHROOM4Q9ULL8 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC33.92■■■■□ 3.02
SHROOM4Q9ULL8 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC33.92■■■■□ 3.02
SHROOM4Q9ULL8 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC33.92■■■■□ 3.02
SHROOM4Q9ULL8 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC33.92■■■■□ 3.02
SHROOM4Q9ULL8 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC33.92■■■■□ 3.02
SHROOM4Q9ULL8 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC33.91■■■■□ 3.02
SHROOM4Q9ULL8 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC33.91■■■■□ 3.02
SHROOM4Q9ULL8 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC33.91■■■■□ 3.02
SHROOM4Q9ULL8 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC33.91■■■■□ 3.02
SHROOM4Q9ULL8 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC33.91■■■■□ 3.02
SHROOM4Q9ULL8 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC33.91■■■■□ 3.02
SHROOM4Q9ULL8 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC33.91■■■■□ 3.02
SHROOM4Q9ULL8 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC33.91■■■■□ 3.02
SHROOM4Q9ULL8 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC33.91■■■■□ 3.02
SHROOM4Q9ULL8 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC33.91■■■■□ 3.02
SHROOM4Q9ULL8 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC33.91■■■■□ 3.02
SHROOM4Q9ULL8 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC33.91■■■■□ 3.02
SHROOM4Q9ULL8 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC33.91■■■■□ 3.02
SHROOM4Q9ULL8 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC33.91■■■■□ 3.02
SHROOM4Q9ULL8 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC33.91■■■■□ 3.02
SHROOM4Q9ULL8 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC33.91■■■■□ 3.02
SHROOM4Q9ULL8 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC33.9■■■■□ 3.02
SHROOM4Q9ULL8 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC33.9■■■■□ 3.02
SHROOM4Q9ULL8 AC108751.1-201ENST00000490852 363 ntBASIC33.9■■■■□ 3.02
SHROOM4Q9ULL8 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC33.9■■■■□ 3.02
SHROOM4Q9ULL8 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC33.9■■■■□ 3.02
SHROOM4Q9ULL8 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC33.9■■■■□ 3.02
SHROOM4Q9ULL8 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC33.9■■■■□ 3.02
SHROOM4Q9ULL8 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC33.9■■■■□ 3.02
SHROOM4Q9ULL8 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC33.9■■■■□ 3.02
SHROOM4Q9ULL8 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC33.9■■■■□ 3.02
SHROOM4Q9ULL8 SOD2-201ENST00000337404 991 ntTSL 2 BASIC33.89■■■■□ 3.02
SHROOM4Q9ULL8 FUOM-202ENST00000368551 628 ntTSL 3 BASIC33.89■■■■□ 3.02
SHROOM4Q9ULL8 SYS1-203ENST00000414310 795 ntTSL 3 BASIC33.89■■■■□ 3.02
SHROOM4Q9ULL8 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC33.89■■■■□ 3.02
SHROOM4Q9ULL8 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC33.89■■■■□ 3.02
SHROOM4Q9ULL8 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC33.89■■■■□ 3.02
SHROOM4Q9ULL8 SNHG9-202ENST00000564014 471 ntBASIC33.89■■■■□ 3.02
SHROOM4Q9ULL8 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC33.89■■■■□ 3.02
SHROOM4Q9ULL8 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC33.89■■■■□ 3.02
SHROOM4Q9ULL8 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC33.89■■■■□ 3.02
SHROOM4Q9ULL8 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC33.89■■■■□ 3.02
SHROOM4Q9ULL8 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC33.89■■■■□ 3.02
SHROOM4Q9ULL8 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC33.89■■■■□ 3.02
SHROOM4Q9ULL8 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC33.89■■■■□ 3.02
SHROOM4Q9ULL8 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC33.89■■■■□ 3.02
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms