Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC19.27■□□□□ 0.68
SIX2Q9NPC8 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
SIX2Q9NPC8 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
SIX2Q9NPC8 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SIX2Q9NPC8 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SIX2Q9NPC8 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SIX2Q9NPC8 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SIX2Q9NPC8 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC19.27■□□□□ 0.67
SIX2Q9NPC8 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
SIX2Q9NPC8 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC19.27■□□□□ 0.67
SIX2Q9NPC8 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
SIX2Q9NPC8 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC19.26■□□□□ 0.67
SIX2Q9NPC8 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
SIX2Q9NPC8 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SIX2Q9NPC8 LINC01311-201ENST00000565162 1445 ntBASIC19.26■□□□□ 0.67
SIX2Q9NPC8 BOC-212ENST00000485230 2173 ntTSL 2 BASIC19.26■□□□□ 0.67
SIX2Q9NPC8 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
SIX2Q9NPC8 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC19.26■□□□□ 0.67
SIX2Q9NPC8 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SIX2Q9NPC8 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SIX2Q9NPC8 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC19.26■□□□□ 0.67
SIX2Q9NPC8 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SIX2Q9NPC8 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SIX2Q9NPC8 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC19.26■□□□□ 0.67
SIX2Q9NPC8 TSPY12P-201ENST00000421279 868 ntBASIC19.26■□□□□ 0.67
SIX2Q9NPC8 LY6E-213ENST00000522528 606 ntTSL 3 BASIC19.26■□□□□ 0.67
SIX2Q9NPC8 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC19.26■□□□□ 0.67
SIX2Q9NPC8 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC19.26■□□□□ 0.67
SIX2Q9NPC8 ZNF444P1-201ENST00000559497 298 ntBASIC19.26■□□□□ 0.67
SIX2Q9NPC8 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC19.26■□□□□ 0.67
SIX2Q9NPC8 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SIX2Q9NPC8 GPR32P1-201ENST00000601788 811 ntBASIC19.26■□□□□ 0.67
SIX2Q9NPC8 AL390719.2-201ENST00000606993 987 ntBASIC19.26■□□□□ 0.67
SIX2Q9NPC8 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
SIX2Q9NPC8 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC19.26■□□□□ 0.67
SIX2Q9NPC8 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SIX2Q9NPC8 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SIX2Q9NPC8 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC19.26■□□□□ 0.67
SIX2Q9NPC8 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
SIX2Q9NPC8 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
SIX2Q9NPC8 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SIX2Q9NPC8 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SIX2Q9NPC8 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
SIX2Q9NPC8 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC19.25■□□□□ 0.67
SIX2Q9NPC8 BANP-227ENST00000626016 2144 ntTSL 2 BASIC19.25■□□□□ 0.67
SIX2Q9NPC8 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC19.25■□□□□ 0.67
SIX2Q9NPC8 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC19.25■□□□□ 0.67
SIX2Q9NPC8 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SIX2Q9NPC8 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC19.25■□□□□ 0.67
SIX2Q9NPC8 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SIX2Q9NPC8 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SIX2Q9NPC8 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SIX2Q9NPC8 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SIX2Q9NPC8 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SIX2Q9NPC8 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SIX2Q9NPC8 DDX43P3-201ENST00000441064 443 ntBASIC19.25■□□□□ 0.67
SIX2Q9NPC8 AC005332.3-201ENST00000589904 676 ntBASIC19.25■□□□□ 0.67
SIX2Q9NPC8 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
SIX2Q9NPC8 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SIX2Q9NPC8 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC19.25■□□□□ 0.67
SIX2Q9NPC8 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SIX2Q9NPC8 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SIX2Q9NPC8 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC19.25■□□□□ 0.67
SIX2Q9NPC8 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SIX2Q9NPC8 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SIX2Q9NPC8 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
SIX2Q9NPC8 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SIX2Q9NPC8 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC19.25■□□□□ 0.67
SIX2Q9NPC8 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
SIX2Q9NPC8 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
SIX2Q9NPC8 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SIX2Q9NPC8 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SIX2Q9NPC8 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SIX2Q9NPC8 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SIX2Q9NPC8 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SIX2Q9NPC8 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
SIX2Q9NPC8 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SIX2Q9NPC8 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC19.24■□□□□ 0.67
SIX2Q9NPC8 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC19.24■□□□□ 0.67
SIX2Q9NPC8 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC19.24■□□□□ 0.67
SIX2Q9NPC8 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC19.24■□□□□ 0.67
SIX2Q9NPC8 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC19.24■□□□□ 0.67
SIX2Q9NPC8 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC19.24■□□□□ 0.67
SIX2Q9NPC8 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SIX2Q9NPC8 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
SIX2Q9NPC8 AC068472.1-201ENST00000474589 881 ntBASIC19.24■□□□□ 0.67
SIX2Q9NPC8 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC19.24■□□□□ 0.67
SIX2Q9NPC8 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SIX2Q9NPC8 AC022616.7-201ENST00000525383 220 ntBASIC19.24■□□□□ 0.67
SIX2Q9NPC8 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SIX2Q9NPC8 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SIX2Q9NPC8 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SIX2Q9NPC8 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC19.24■□□□□ 0.67
SIX2Q9NPC8 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC19.24■□□□□ 0.67
SIX2Q9NPC8 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
SIX2Q9NPC8 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
SIX2Q9NPC8 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SIX2Q9NPC8 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SIX2Q9NPC8 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SIX2Q9NPC8 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms