Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
BRF1Q92994 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
BRF1Q92994 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
BRF1Q92994 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
BRF1Q92994 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
BRF1Q92994 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
BRF1Q92994 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
BRF1Q92994 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
BRF1Q92994 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC21.16■□□□□ 0.98
BRF1Q92994 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC21.16■□□□□ 0.98
BRF1Q92994 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
BRF1Q92994 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC21.16■□□□□ 0.98
BRF1Q92994 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
BRF1Q92994 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
BRF1Q92994 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
BRF1Q92994 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
BRF1Q92994 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
BRF1Q92994 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC21.16■□□□□ 0.98
BRF1Q92994 AL671277.2-201ENST00000458060 996 ntBASIC21.16■□□□□ 0.98
BRF1Q92994 RNF126P1-202ENST00000569893 925 ntBASIC21.16■□□□□ 0.98
BRF1Q92994 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC21.16■□□□□ 0.98
BRF1Q92994 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC21.16■□□□□ 0.98
BRF1Q92994 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
BRF1Q92994 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
BRF1Q92994 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
BRF1Q92994 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC21.16■□□□□ 0.98
BRF1Q92994 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC21.16■□□□□ 0.98
BRF1Q92994 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
BRF1Q92994 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
BRF1Q92994 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
BRF1Q92994 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
BRF1Q92994 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
BRF1Q92994 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
BRF1Q92994 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
BRF1Q92994 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
BRF1Q92994 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
BRF1Q92994 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC21.15■□□□□ 0.98
BRF1Q92994 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
BRF1Q92994 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
BRF1Q92994 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC21.15■□□□□ 0.98
BRF1Q92994 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
BRF1Q92994 SAPCD2P2-201ENST00000431719 1174 ntBASIC21.15■□□□□ 0.98
BRF1Q92994 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
BRF1Q92994 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC21.15■□□□□ 0.98
BRF1Q92994 KRT18P65-201ENST00000439811 1286 ntBASIC21.15■□□□□ 0.98
BRF1Q92994 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC21.15■□□□□ 0.98
BRF1Q92994 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC21.15■□□□□ 0.98
BRF1Q92994 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC21.15■□□□□ 0.98
BRF1Q92994 LINC00896-202ENST00000609602 2128 ntBASIC21.15■□□□□ 0.98
BRF1Q92994 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC21.15■□□□□ 0.98
BRF1Q92994 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC21.15■□□□□ 0.98
BRF1Q92994 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
BRF1Q92994 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC21.15■□□□□ 0.98
BRF1Q92994 FST-202ENST00000396947 2538 ntTSL 5 BASIC21.15■□□□□ 0.98
BRF1Q92994 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
BRF1Q92994 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC21.15■□□□□ 0.98
BRF1Q92994 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
BRF1Q92994 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
BRF1Q92994 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
BRF1Q92994 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
BRF1Q92994 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
BRF1Q92994 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC21.14■□□□□ 0.98
BRF1Q92994 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
BRF1Q92994 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
BRF1Q92994 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC21.14■□□□□ 0.98
BRF1Q92994 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
BRF1Q92994 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC21.14■□□□□ 0.98
BRF1Q92994 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
BRF1Q92994 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC21.14■□□□□ 0.98
BRF1Q92994 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC21.14■□□□□ 0.97
BRF1Q92994 AC022898.2-201ENST00000616822 1312 ntBASIC21.14■□□□□ 0.97
BRF1Q92994 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC21.14■□□□□ 0.97
BRF1Q92994 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
BRF1Q92994 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
BRF1Q92994 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
BRF1Q92994 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC21.14■□□□□ 0.97
BRF1Q92994 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC21.14■□□□□ 0.97
BRF1Q92994 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
BRF1Q92994 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.97
BRF1Q92994 WDR6-223ENST00000627177 207 ntTSL 2 BASIC21.14■□□□□ 0.97
BRF1Q92994 PODN-203ENST00000395871 2744 ntTSL 5 BASIC21.14■□□□□ 0.97
BRF1Q92994 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC21.14■□□□□ 0.97
BRF1Q92994 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC21.14■□□□□ 0.97
BRF1Q92994 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
BRF1Q92994 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC21.13■□□□□ 0.97
BRF1Q92994 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
BRF1Q92994 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
BRF1Q92994 AL353692.3-201ENST00000407031 1396 ntBASIC21.13■□□□□ 0.97
BRF1Q92994 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
BRF1Q92994 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC21.13■□□□□ 0.97
BRF1Q92994 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
BRF1Q92994 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
BRF1Q92994 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC21.13■□□□□ 0.97
BRF1Q92994 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
BRF1Q92994 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC21.13■□□□□ 0.97
BRF1Q92994 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC21.13■□□□□ 0.97
BRF1Q92994 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC21.13■□□□□ 0.97
BRF1Q92994 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC21.13■□□□□ 0.97
BRF1Q92994 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC21.13■□□□□ 0.97
BRF1Q92994 LINC01238-205ENST00000567549 1107 ntBASIC21.13■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms