Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
ERCC4Q92889 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
ERCC4Q92889 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
ERCC4Q92889 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
ERCC4Q92889 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC20.4■□□□□ 0.86
ERCC4Q92889 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
ERCC4Q92889 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.86
ERCC4Q92889 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
ERCC4Q92889 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
ERCC4Q92889 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
ERCC4Q92889 CYP2D8P-201ENST00000433633 1490 ntBASIC20.39■□□□□ 0.85
ERCC4Q92889 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
ERCC4Q92889 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC20.39■□□□□ 0.85
ERCC4Q92889 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
ERCC4Q92889 NF2-208ENST00000403435 2568 ntTSL 5 BASIC20.39■□□□□ 0.85
ERCC4Q92889 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC20.39■□□□□ 0.85
ERCC4Q92889 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC20.39■□□□□ 0.85
ERCC4Q92889 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC20.39■□□□□ 0.85
ERCC4Q92889 AC104390.1-201ENST00000555663 520 ntBASIC20.39■□□□□ 0.85
ERCC4Q92889 MNT-208ENST00000575394 606 ntTSL 4 BASIC20.39■□□□□ 0.85
ERCC4Q92889 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC20.39■□□□□ 0.85
ERCC4Q92889 AC112497.1-201ENST00000624824 639 ntBASIC20.39■□□□□ 0.85
ERCC4Q92889 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
ERCC4Q92889 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC20.39■□□□□ 0.85
ERCC4Q92889 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
ERCC4Q92889 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
ERCC4Q92889 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
ERCC4Q92889 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
ERCC4Q92889 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC20.39■□□□□ 0.85
ERCC4Q92889 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
ERCC4Q92889 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
ERCC4Q92889 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
ERCC4Q92889 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
ERCC4Q92889 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
ERCC4Q92889 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC20.38■□□□□ 0.85
ERCC4Q92889 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC20.38■□□□□ 0.85
ERCC4Q92889 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC20.38■□□□□ 0.85
ERCC4Q92889 KRT18P55-202ENST00000578578 1546 ntBASIC20.38■□□□□ 0.85
ERCC4Q92889 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC20.38■□□□□ 0.85
ERCC4Q92889 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
ERCC4Q92889 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC20.38■□□□□ 0.85
ERCC4Q92889 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC20.38■□□□□ 0.85
ERCC4Q92889 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC20.38■□□□□ 0.85
ERCC4Q92889 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC20.38■□□□□ 0.85
ERCC4Q92889 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC20.38■□□□□ 0.85
ERCC4Q92889 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
ERCC4Q92889 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
ERCC4Q92889 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
ERCC4Q92889 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
ERCC4Q92889 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
ERCC4Q92889 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
ERCC4Q92889 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
ERCC4Q92889 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
ERCC4Q92889 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
ERCC4Q92889 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
ERCC4Q92889 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
ERCC4Q92889 AC022211.2-201ENST00000585075 2527 ntBASIC20.37■□□□□ 0.85
ERCC4Q92889 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
ERCC4Q92889 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC20.37■□□□□ 0.85
ERCC4Q92889 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC20.37■□□□□ 0.85
ERCC4Q92889 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
ERCC4Q92889 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
ERCC4Q92889 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
ERCC4Q92889 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
ERCC4Q92889 BAALC-201ENST00000297574 801 ntTSL 3 BASIC20.37■□□□□ 0.85
ERCC4Q92889 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
ERCC4Q92889 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
ERCC4Q92889 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC20.37■□□□□ 0.85
ERCC4Q92889 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC20.37■□□□□ 0.85
ERCC4Q92889 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
ERCC4Q92889 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC20.37■□□□□ 0.85
ERCC4Q92889 AP006294.2-201ENST00000641667 209 ntBASIC20.37■□□□□ 0.85
ERCC4Q92889 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC20.37■□□□□ 0.85
ERCC4Q92889 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
ERCC4Q92889 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
ERCC4Q92889 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC20.37■□□□□ 0.85
ERCC4Q92889 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
ERCC4Q92889 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
ERCC4Q92889 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
ERCC4Q92889 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC20.36■□□□□ 0.85
ERCC4Q92889 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
ERCC4Q92889 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
ERCC4Q92889 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
ERCC4Q92889 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC20.36■□□□□ 0.85
ERCC4Q92889 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
ERCC4Q92889 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
ERCC4Q92889 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC20.36■□□□□ 0.85
ERCC4Q92889 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
ERCC4Q92889 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC20.36■□□□□ 0.85
ERCC4Q92889 BX088651.1-201ENST00000540551 451 ntBASIC20.36■□□□□ 0.85
ERCC4Q92889 DET1-205ENST00000558413 583 ntTSL 4 BASIC20.36■□□□□ 0.85
ERCC4Q92889 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
ERCC4Q92889 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
ERCC4Q92889 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
ERCC4Q92889 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC20.36■□□□□ 0.85
ERCC4Q92889 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
ERCC4Q92889 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC20.36■□□□□ 0.85
ERCC4Q92889 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
ERCC4Q92889 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC20.36■□□□□ 0.85
ERCC4Q92889 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 58.7 ms