Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC21.24■□□□□ 0.99
NKX2-3Q8TAU0 BET1L-206ENST00000486280 665 ntTSL 3 BASIC21.24■□□□□ 0.99
NKX2-3Q8TAU0 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
NKX2-3Q8TAU0 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
NKX2-3Q8TAU0 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC21.24■□□□□ 0.99
NKX2-3Q8TAU0 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC21.24■□□□□ 0.99
NKX2-3Q8TAU0 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
NKX2-3Q8TAU0 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC21.24■□□□□ 0.99
NKX2-3Q8TAU0 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC21.24■□□□□ 0.99
NKX2-3Q8TAU0 AL773604.1-201ENST00000617417 272 ntBASIC21.24■□□□□ 0.99
NKX2-3Q8TAU0 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
NKX2-3Q8TAU0 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
NKX2-3Q8TAU0 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC21.24■□□□□ 0.99
NKX2-3Q8TAU0 NOC2LP1-202ENST00000452600 2235 ntBASIC21.24■□□□□ 0.99
NKX2-3Q8TAU0 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
NKX2-3Q8TAU0 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC21.23■□□□□ 0.99
NKX2-3Q8TAU0 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC21.23■□□□□ 0.99
NKX2-3Q8TAU0 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC21.23■□□□□ 0.99
NKX2-3Q8TAU0 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
NKX2-3Q8TAU0 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
NKX2-3Q8TAU0 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC21.23■□□□□ 0.99
NKX2-3Q8TAU0 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
NKX2-3Q8TAU0 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
NKX2-3Q8TAU0 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
NKX2-3Q8TAU0 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
NKX2-3Q8TAU0 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC21.23■□□□□ 0.99
NKX2-3Q8TAU0 MTCL1P1-201ENST00000446207 792 ntBASIC21.23■□□□□ 0.99
NKX2-3Q8TAU0 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC21.23■□□□□ 0.99
NKX2-3Q8TAU0 AC099336.1-202ENST00000602961 463 ntBASIC21.23■□□□□ 0.99
NKX2-3Q8TAU0 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC21.23■□□□□ 0.99
NKX2-3Q8TAU0 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
NKX2-3Q8TAU0 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC21.23■□□□□ 0.99
NKX2-3Q8TAU0 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC21.23■□□□□ 0.99
NKX2-3Q8TAU0 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
NKX2-3Q8TAU0 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
NKX2-3Q8TAU0 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
NKX2-3Q8TAU0 PMS2P7-201ENST00000506558 1336 ntBASIC21.23■□□□□ 0.99
NKX2-3Q8TAU0 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
NKX2-3Q8TAU0 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
NKX2-3Q8TAU0 AC233702.3-201ENST00000578656 1387 ntBASIC21.23■□□□□ 0.99
NKX2-3Q8TAU0 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
NKX2-3Q8TAU0 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
NKX2-3Q8TAU0 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
NKX2-3Q8TAU0 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC21.22■□□□□ 0.99
NKX2-3Q8TAU0 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC21.22■□□□□ 0.99
NKX2-3Q8TAU0 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
NKX2-3Q8TAU0 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC21.22■□□□□ 0.99
NKX2-3Q8TAU0 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC21.22■□□□□ 0.99
NKX2-3Q8TAU0 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC21.22■□□□□ 0.99
NKX2-3Q8TAU0 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
NKX2-3Q8TAU0 REXO1L6P-202ENST00000619970 1078 ntBASIC21.22■□□□□ 0.99
NKX2-3Q8TAU0 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
NKX2-3Q8TAU0 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
NKX2-3Q8TAU0 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
NKX2-3Q8TAU0 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
NKX2-3Q8TAU0 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
NKX2-3Q8TAU0 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
NKX2-3Q8TAU0 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
NKX2-3Q8TAU0 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
NKX2-3Q8TAU0 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC21.21■□□□□ 0.99
NKX2-3Q8TAU0 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
NKX2-3Q8TAU0 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
NKX2-3Q8TAU0 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
NKX2-3Q8TAU0 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
NKX2-3Q8TAU0 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
NKX2-3Q8TAU0 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
NKX2-3Q8TAU0 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
NKX2-3Q8TAU0 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC21.21■□□□□ 0.99
NKX2-3Q8TAU0 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
NKX2-3Q8TAU0 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC21.21■□□□□ 0.99
NKX2-3Q8TAU0 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC21.21■□□□□ 0.99
NKX2-3Q8TAU0 BX842568.4-201ENST00000421222 227 ntBASIC21.21■□□□□ 0.99
NKX2-3Q8TAU0 IGHV3-47-201ENST00000425060 335 ntBASIC21.21■□□□□ 0.99
NKX2-3Q8TAU0 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC21.21■□□□□ 0.99
NKX2-3Q8TAU0 KRT18P65-201ENST00000439811 1286 ntBASIC21.21■□□□□ 0.99
NKX2-3Q8TAU0 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC21.21■□□□□ 0.99
NKX2-3Q8TAU0 RNPS1P1-201ENST00000507437 918 ntBASIC21.21■□□□□ 0.99
NKX2-3Q8TAU0 ABR-204ENST00000543210 1049 ntTSL 2 BASIC21.21■□□□□ 0.99
NKX2-3Q8TAU0 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
NKX2-3Q8TAU0 AC009154.2-201ENST00000621177 724 ntBASIC21.21■□□□□ 0.99
NKX2-3Q8TAU0 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC21.21■□□□□ 0.99
NKX2-3Q8TAU0 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
NKX2-3Q8TAU0 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC21.21■□□□□ 0.99
NKX2-3Q8TAU0 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
NKX2-3Q8TAU0 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
NKX2-3Q8TAU0 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
NKX2-3Q8TAU0 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC21.21■□□□□ 0.99
NKX2-3Q8TAU0 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC21.21■□□□□ 0.99
NKX2-3Q8TAU0 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC21.21■□□□□ 0.99
NKX2-3Q8TAU0 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC21.21■□□□□ 0.99
NKX2-3Q8TAU0 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
NKX2-3Q8TAU0 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
NKX2-3Q8TAU0 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
NKX2-3Q8TAU0 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
NKX2-3Q8TAU0 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC21.2■□□□□ 0.99
NKX2-3Q8TAU0 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
NKX2-3Q8TAU0 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
NKX2-3Q8TAU0 AC138028.4-201ENST00000564984 1845 ntBASIC21.2■□□□□ 0.98
NKX2-3Q8TAU0 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
NKX2-3Q8TAU0 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms