Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
CCDC54Q8NEL0 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
CCDC54Q8NEL0 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC15.69■□□□□ 0.1
CCDC54Q8NEL0 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
CCDC54Q8NEL0 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CCDC54Q8NEL0 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CCDC54Q8NEL0 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CCDC54Q8NEL0 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC15.69■□□□□ 0.1
CCDC54Q8NEL0 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
CCDC54Q8NEL0 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
CCDC54Q8NEL0 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC15.69■□□□□ 0.1
CCDC54Q8NEL0 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
CCDC54Q8NEL0 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
CCDC54Q8NEL0 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CCDC54Q8NEL0 TSPY7P-201ENST00000431358 1114 ntBASIC15.69■□□□□ 0.1
CCDC54Q8NEL0 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC15.69■□□□□ 0.1
CCDC54Q8NEL0 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CCDC54Q8NEL0 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC15.69■□□□□ 0.1
CCDC54Q8NEL0 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC15.69■□□□□ 0.1
CCDC54Q8NEL0 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC15.69■□□□□ 0.1
CCDC54Q8NEL0 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC15.69■□□□□ 0.1
CCDC54Q8NEL0 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC15.69■□□□□ 0.1
CCDC54Q8NEL0 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC15.69■□□□□ 0.1
CCDC54Q8NEL0 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC15.69■□□□□ 0.1
CCDC54Q8NEL0 LINC00896-202ENST00000609602 2128 ntBASIC15.69■□□□□ 0.1
CCDC54Q8NEL0 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
CCDC54Q8NEL0 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CCDC54Q8NEL0 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CCDC54Q8NEL0 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
CCDC54Q8NEL0 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC15.69■□□□□ 0.1
CCDC54Q8NEL0 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CCDC54Q8NEL0 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
CCDC54Q8NEL0 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC15.69■□□□□ 0.1
CCDC54Q8NEL0 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CCDC54Q8NEL0 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC15.68■□□□□ 0.1
CCDC54Q8NEL0 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CCDC54Q8NEL0 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
CCDC54Q8NEL0 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CCDC54Q8NEL0 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
CCDC54Q8NEL0 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
CCDC54Q8NEL0 CD276-203ENST00000537340 2439 ntTSL 2 BASIC15.68■□□□□ 0.1
CCDC54Q8NEL0 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
CCDC54Q8NEL0 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CCDC54Q8NEL0 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
CCDC54Q8NEL0 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
CCDC54Q8NEL0 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC15.68■□□□□ 0.1
CCDC54Q8NEL0 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC15.68■□□□□ 0.1
CCDC54Q8NEL0 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
CCDC54Q8NEL0 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC15.68■□□□□ 0.1
CCDC54Q8NEL0 GAD2-202ENST00000376248 680 ntTSL 5 BASIC15.68■□□□□ 0.1
CCDC54Q8NEL0 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
CCDC54Q8NEL0 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC15.68■□□□□ 0.1
CCDC54Q8NEL0 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC15.68■□□□□ 0.1
CCDC54Q8NEL0 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC15.68■□□□□ 0.1
CCDC54Q8NEL0 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CCDC54Q8NEL0 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC15.68■□□□□ 0.1
CCDC54Q8NEL0 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC15.68■□□□□ 0.1
CCDC54Q8NEL0 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC15.68■□□□□ 0.1
CCDC54Q8NEL0 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC15.68■□□□□ 0.1
CCDC54Q8NEL0 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CCDC54Q8NEL0 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC15.68■□□□□ 0.1
CCDC54Q8NEL0 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CCDC54Q8NEL0 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
CCDC54Q8NEL0 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC15.68■□□□□ 0.1
CCDC54Q8NEL0 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CCDC54Q8NEL0 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC15.68■□□□□ 0.1
CCDC54Q8NEL0 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC15.68■□□□□ 0.1
CCDC54Q8NEL0 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CCDC54Q8NEL0 SP100-208ENST00000427101 1922 ntTSL 2 BASIC15.68■□□□□ 0.1
CCDC54Q8NEL0 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC15.68■□□□□ 0.1
CCDC54Q8NEL0 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CCDC54Q8NEL0 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC15.68■□□□□ 0.1
CCDC54Q8NEL0 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CCDC54Q8NEL0 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
CCDC54Q8NEL0 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CCDC54Q8NEL0 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CCDC54Q8NEL0 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC15.68■□□□□ 0.1
CCDC54Q8NEL0 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CCDC54Q8NEL0 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CCDC54Q8NEL0 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
CCDC54Q8NEL0 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC15.68■□□□□ 0.1
CCDC54Q8NEL0 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC54Q8NEL0 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC15.67■□□□□ 0.1
CCDC54Q8NEL0 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC54Q8NEL0 NARF-204ENST00000390006 1766 ntTSL 2 BASIC15.67■□□□□ 0.1
CCDC54Q8NEL0 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
CCDC54Q8NEL0 AC067852.2-201ENST00000590513 2313 ntBASIC15.67■□□□□ 0.1
CCDC54Q8NEL0 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
CCDC54Q8NEL0 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC54Q8NEL0 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC54Q8NEL0 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
CCDC54Q8NEL0 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC54Q8NEL0 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC54Q8NEL0 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC15.67■□□□□ 0.1
CCDC54Q8NEL0 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
CCDC54Q8NEL0 HMGA1P5-201ENST00000412453 271 ntBASIC15.67■□□□□ 0.1
CCDC54Q8NEL0 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC54Q8NEL0 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC54Q8NEL0 SEC1P-202ENST00000473944 940 ntBASIC15.67■□□□□ 0.1
CCDC54Q8NEL0 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC15.67■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms