Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
DEPDC4Q8N2C3 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
DEPDC4Q8N2C3 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
DEPDC4Q8N2C3 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
DEPDC4Q8N2C3 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
DEPDC4Q8N2C3 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
DEPDC4Q8N2C3 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
DEPDC4Q8N2C3 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
DEPDC4Q8N2C3 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
DEPDC4Q8N2C3 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC16.76■□□□□ 0.27
DEPDC4Q8N2C3 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
DEPDC4Q8N2C3 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
DEPDC4Q8N2C3 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC16.75■□□□□ 0.27
DEPDC4Q8N2C3 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
DEPDC4Q8N2C3 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
DEPDC4Q8N2C3 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
DEPDC4Q8N2C3 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
DEPDC4Q8N2C3 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
DEPDC4Q8N2C3 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
DEPDC4Q8N2C3 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC16.75■□□□□ 0.27
DEPDC4Q8N2C3 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
DEPDC4Q8N2C3 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC16.75■□□□□ 0.27
DEPDC4Q8N2C3 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC16.75■□□□□ 0.27
DEPDC4Q8N2C3 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
DEPDC4Q8N2C3 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC16.75■□□□□ 0.27
DEPDC4Q8N2C3 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
DEPDC4Q8N2C3 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC16.75■□□□□ 0.27
DEPDC4Q8N2C3 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
DEPDC4Q8N2C3 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
DEPDC4Q8N2C3 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
DEPDC4Q8N2C3 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
DEPDC4Q8N2C3 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
DEPDC4Q8N2C3 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
DEPDC4Q8N2C3 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC16.75■□□□□ 0.27
DEPDC4Q8N2C3 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
DEPDC4Q8N2C3 PTPA-216ENST00000432651 857 ntTSL 2 BASIC16.75■□□□□ 0.27
DEPDC4Q8N2C3 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
DEPDC4Q8N2C3 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
DEPDC4Q8N2C3 AC097488.1-201ENST00000507834 756 ntBASIC16.75■□□□□ 0.27
DEPDC4Q8N2C3 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC16.75■□□□□ 0.27
DEPDC4Q8N2C3 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC16.75■□□□□ 0.27
DEPDC4Q8N2C3 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC16.75■□□□□ 0.27
DEPDC4Q8N2C3 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
DEPDC4Q8N2C3 AC011298.2-201ENST00000617989 482 ntBASIC16.75■□□□□ 0.27
DEPDC4Q8N2C3 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC16.75■□□□□ 0.27
DEPDC4Q8N2C3 AC097493.4-201ENST00000641197 219 ntBASIC16.75■□□□□ 0.27
DEPDC4Q8N2C3 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
DEPDC4Q8N2C3 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
DEPDC4Q8N2C3 AC006116.8-202ENST00000587620 1550 ntBASIC16.75■□□□□ 0.27
DEPDC4Q8N2C3 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
DEPDC4Q8N2C3 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC16.75■□□□□ 0.27
DEPDC4Q8N2C3 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
DEPDC4Q8N2C3 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
DEPDC4Q8N2C3 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
DEPDC4Q8N2C3 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
DEPDC4Q8N2C3 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
DEPDC4Q8N2C3 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
DEPDC4Q8N2C3 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC16.75■□□□□ 0.27
DEPDC4Q8N2C3 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC16.75■□□□□ 0.27
DEPDC4Q8N2C3 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
DEPDC4Q8N2C3 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
DEPDC4Q8N2C3 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
DEPDC4Q8N2C3 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC16.74■□□□□ 0.27
DEPDC4Q8N2C3 AL023806.1-201ENST00000603994 1649 ntBASIC16.74■□□□□ 0.27
DEPDC4Q8N2C3 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
DEPDC4Q8N2C3 KRT18P22-201ENST00000402024 1347 ntBASIC16.74■□□□□ 0.27
DEPDC4Q8N2C3 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
DEPDC4Q8N2C3 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC16.74■□□□□ 0.27
DEPDC4Q8N2C3 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
DEPDC4Q8N2C3 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC16.74■□□□□ 0.27
DEPDC4Q8N2C3 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
DEPDC4Q8N2C3 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC16.74■□□□□ 0.27
DEPDC4Q8N2C3 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
DEPDC4Q8N2C3 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
DEPDC4Q8N2C3 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC16.74■□□□□ 0.27
DEPDC4Q8N2C3 NME9-203ENST00000383180 2133 ntTSL 2 BASIC16.74■□□□□ 0.27
DEPDC4Q8N2C3 CRYGFP-201ENST00000418459 633 ntBASIC16.74■□□□□ 0.27
DEPDC4Q8N2C3 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC16.74■□□□□ 0.27
DEPDC4Q8N2C3 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC16.74■□□□□ 0.27
DEPDC4Q8N2C3 SLC25A1P4-201ENST00000567977 778 ntBASIC16.74■□□□□ 0.27
DEPDC4Q8N2C3 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC16.74■□□□□ 0.27
DEPDC4Q8N2C3 ABBA01031674.1-201ENST00000635145 728 ntBASIC16.74■□□□□ 0.27
DEPDC4Q8N2C3 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC16.74■□□□□ 0.27
DEPDC4Q8N2C3 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC16.74■□□□□ 0.27
DEPDC4Q8N2C3 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC16.74■□□□□ 0.27
DEPDC4Q8N2C3 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
DEPDC4Q8N2C3 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC16.74■□□□□ 0.27
DEPDC4Q8N2C3 LINC01568-207ENST00000641790 1380 ntBASIC16.74■□□□□ 0.27
DEPDC4Q8N2C3 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
DEPDC4Q8N2C3 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
DEPDC4Q8N2C3 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC16.74■□□□□ 0.27
DEPDC4Q8N2C3 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC16.74■□□□□ 0.27
DEPDC4Q8N2C3 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC16.74■□□□□ 0.27
DEPDC4Q8N2C3 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC16.74■□□□□ 0.27
DEPDC4Q8N2C3 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC16.73■□□□□ 0.27
DEPDC4Q8N2C3 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
DEPDC4Q8N2C3 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
DEPDC4Q8N2C3 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC16.73■□□□□ 0.27
DEPDC4Q8N2C3 AD000864.1-201ENST00000624076 2295 ntBASIC16.73■□□□□ 0.27
DEPDC4Q8N2C3 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms