Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC40Q4G0X9 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC40Q4G0X9 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC19.81■□□□□ 0.76
CCDC40Q4G0X9 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC40Q4G0X9 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC19.81■□□□□ 0.76
CCDC40Q4G0X9 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC40Q4G0X9 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
CCDC40Q4G0X9 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC40Q4G0X9 AC132938.6-201ENST00000623828 1655 ntBASIC19.81■□□□□ 0.76
CCDC40Q4G0X9 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC40Q4G0X9 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC40Q4G0X9 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC19.8■□□□□ 0.76
CCDC40Q4G0X9 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC40Q4G0X9 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC19.8■□□□□ 0.76
CCDC40Q4G0X9 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC19.8■□□□□ 0.76
CCDC40Q4G0X9 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC40Q4G0X9 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC40Q4G0X9 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC40Q4G0X9 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
CCDC40Q4G0X9 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC19.8■□□□□ 0.76
CCDC40Q4G0X9 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
CCDC40Q4G0X9 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC40Q4G0X9 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC19.8■□□□□ 0.76
CCDC40Q4G0X9 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC40Q4G0X9 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC40Q4G0X9 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC40Q4G0X9 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC19.8■□□□□ 0.76
CCDC40Q4G0X9 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC40Q4G0X9 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC19.8■□□□□ 0.76
CCDC40Q4G0X9 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC19.8■□□□□ 0.76
CCDC40Q4G0X9 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC19.8■□□□□ 0.76
CCDC40Q4G0X9 RPS20-210ENST00000523936 899 ntTSL 2 BASIC19.8■□□□□ 0.76
CCDC40Q4G0X9 CD81-212ENST00000526072 1172 ntTSL 5 BASIC19.8■□□□□ 0.76
CCDC40Q4G0X9 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC40Q4G0X9 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC40Q4G0X9 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
CCDC40Q4G0X9 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
CCDC40Q4G0X9 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC40Q4G0X9 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC19.8■□□□□ 0.76
CCDC40Q4G0X9 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC40Q4G0X9 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC19.79■□□□□ 0.76
CCDC40Q4G0X9 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
CCDC40Q4G0X9 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC40Q4G0X9 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC40Q4G0X9 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
CCDC40Q4G0X9 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC19.79■□□□□ 0.76
CCDC40Q4G0X9 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC40Q4G0X9 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC40Q4G0X9 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC40Q4G0X9 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC40Q4G0X9 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC40Q4G0X9 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC40Q4G0X9 ANKRD20A18P-201ENST00000359341 492 ntBASIC19.79■□□□□ 0.76
CCDC40Q4G0X9 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC19.79■□□□□ 0.76
CCDC40Q4G0X9 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC19.79■□□□□ 0.76
CCDC40Q4G0X9 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
CCDC40Q4G0X9 AC073912.3-201ENST00000624414 853 ntBASIC19.79■□□□□ 0.76
CCDC40Q4G0X9 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC40Q4G0X9 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC19.79■□□□□ 0.76
CCDC40Q4G0X9 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC40Q4G0X9 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC40Q4G0X9 NME9-203ENST00000383180 2133 ntTSL 2 BASIC19.79■□□□□ 0.76
CCDC40Q4G0X9 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
CCDC40Q4G0X9 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC19.79■□□□□ 0.76
CCDC40Q4G0X9 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC40Q4G0X9 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC19.79■□□□□ 0.76
CCDC40Q4G0X9 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC40Q4G0X9 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC40Q4G0X9 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
CCDC40Q4G0X9 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC40Q4G0X9 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
CCDC40Q4G0X9 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC40Q4G0X9 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
CCDC40Q4G0X9 LINC00896-202ENST00000609602 2128 ntBASIC19.78■□□□□ 0.76
CCDC40Q4G0X9 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC40Q4G0X9 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC40Q4G0X9 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC40Q4G0X9 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC40Q4G0X9 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC40Q4G0X9 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC40Q4G0X9 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC19.78■□□□□ 0.76
CCDC40Q4G0X9 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC19.78■□□□□ 0.76
CCDC40Q4G0X9 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC19.78■□□□□ 0.76
CCDC40Q4G0X9 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC40Q4G0X9 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
CCDC40Q4G0X9 COX11P1-201ENST00000489116 835 ntBASIC19.78■□□□□ 0.76
CCDC40Q4G0X9 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
CCDC40Q4G0X9 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC19.78■□□□□ 0.76
CCDC40Q4G0X9 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC19.78■□□□□ 0.76
CCDC40Q4G0X9 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC40Q4G0X9 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
CCDC40Q4G0X9 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC40Q4G0X9 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC40Q4G0X9 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC19.78■□□□□ 0.76
CCDC40Q4G0X9 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC40Q4G0X9 NARF-204ENST00000390006 1766 ntTSL 2 BASIC19.78■□□□□ 0.76
CCDC40Q4G0X9 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC19.77■□□□□ 0.76
CCDC40Q4G0X9 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC19.77■□□□□ 0.76
CCDC40Q4G0X9 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC40Q4G0X9 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms