Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
CCDC88AQ3V6T2 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
CCDC88AQ3V6T2 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
CCDC88AQ3V6T2 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
CCDC88AQ3V6T2 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC21.83■■□□□ 1.09
CCDC88AQ3V6T2 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC21.83■■□□□ 1.09
CCDC88AQ3V6T2 BCRP1-201ENST00000444246 691 ntBASIC21.83■■□□□ 1.09
CCDC88AQ3V6T2 SRP19-202ENST00000445150 833 ntTSL 2 BASIC21.83■■□□□ 1.09
CCDC88AQ3V6T2 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.09
CCDC88AQ3V6T2 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC21.83■■□□□ 1.09
CCDC88AQ3V6T2 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC21.83■■□□□ 1.09
CCDC88AQ3V6T2 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC21.83■■□□□ 1.09
CCDC88AQ3V6T2 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
CCDC88AQ3V6T2 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
CCDC88AQ3V6T2 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
CCDC88AQ3V6T2 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.08
CCDC88AQ3V6T2 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC21.83■■□□□ 1.08
CCDC88AQ3V6T2 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
CCDC88AQ3V6T2 SLC4A1APP2-201ENST00000424054 1259 ntBASIC21.83■■□□□ 1.08
CCDC88AQ3V6T2 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC21.83■■□□□ 1.08
CCDC88AQ3V6T2 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
CCDC88AQ3V6T2 KRT18P65-201ENST00000439811 1286 ntBASIC21.83■■□□□ 1.08
CCDC88AQ3V6T2 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC21.83■■□□□ 1.08
CCDC88AQ3V6T2 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC21.83■■□□□ 1.08
CCDC88AQ3V6T2 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
CCDC88AQ3V6T2 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
CCDC88AQ3V6T2 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.08
CCDC88AQ3V6T2 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
CCDC88AQ3V6T2 GMCL1P1-201ENST00000463439 1581 ntBASIC21.83■■□□□ 1.08
CCDC88AQ3V6T2 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.08
CCDC88AQ3V6T2 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CCDC88AQ3V6T2 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC21.82■■□□□ 1.08
CCDC88AQ3V6T2 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC21.82■■□□□ 1.08
CCDC88AQ3V6T2 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC21.82■■□□□ 1.08
CCDC88AQ3V6T2 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
CCDC88AQ3V6T2 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
CCDC88AQ3V6T2 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
CCDC88AQ3V6T2 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
CCDC88AQ3V6T2 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
CCDC88AQ3V6T2 AC093010.1-201ENST00000473625 1624 ntBASIC21.82■■□□□ 1.08
CCDC88AQ3V6T2 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CCDC88AQ3V6T2 PTMS-202ENST00000389462 773 ntTSL 2 BASIC21.82■■□□□ 1.08
CCDC88AQ3V6T2 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CCDC88AQ3V6T2 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CCDC88AQ3V6T2 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
CCDC88AQ3V6T2 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
CCDC88AQ3V6T2 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CCDC88AQ3V6T2 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CCDC88AQ3V6T2 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
CCDC88AQ3V6T2 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
CCDC88AQ3V6T2 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CCDC88AQ3V6T2 CEND1P1-201ENST00000451006 455 ntBASIC21.81■■□□□ 1.08
CCDC88AQ3V6T2 CCDC74BP1-201ENST00000508880 1123 ntBASIC21.81■■□□□ 1.08
CCDC88AQ3V6T2 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CCDC88AQ3V6T2 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC21.81■■□□□ 1.08
CCDC88AQ3V6T2 AC010654.1-201ENST00000615722 808 ntBASIC21.81■■□□□ 1.08
CCDC88AQ3V6T2 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CCDC88AQ3V6T2 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC21.81■■□□□ 1.08
CCDC88AQ3V6T2 MED29-202ENST00000594368 1471 ntTSL 2 BASIC21.81■■□□□ 1.08
CCDC88AQ3V6T2 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CCDC88AQ3V6T2 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC21.81■■□□□ 1.08
CCDC88AQ3V6T2 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC21.81■■□□□ 1.08
CCDC88AQ3V6T2 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CCDC88AQ3V6T2 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC21.81■■□□□ 1.08
CCDC88AQ3V6T2 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
CCDC88AQ3V6T2 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CCDC88AQ3V6T2 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC21.81■■□□□ 1.08
CCDC88AQ3V6T2 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC21.81■■□□□ 1.08
CCDC88AQ3V6T2 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC21.81■■□□□ 1.08
CCDC88AQ3V6T2 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CCDC88AQ3V6T2 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC21.81■■□□□ 1.08
CCDC88AQ3V6T2 ADH5P3-201ENST00000433842 1137 ntBASIC21.81■■□□□ 1.08
CCDC88AQ3V6T2 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC21.81■■□□□ 1.08
CCDC88AQ3V6T2 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC21.81■■□□□ 1.08
CCDC88AQ3V6T2 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CCDC88AQ3V6T2 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC21.81■■□□□ 1.08
CCDC88AQ3V6T2 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC21.81■■□□□ 1.08
CCDC88AQ3V6T2 MIR4751-201ENST00000578027 74 ntBASIC21.81■■□□□ 1.08
CCDC88AQ3V6T2 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC21.81■■□□□ 1.08
CCDC88AQ3V6T2 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CCDC88AQ3V6T2 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CCDC88AQ3V6T2 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC21.81■■□□□ 1.08
CCDC88AQ3V6T2 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC21.81■■□□□ 1.08
CCDC88AQ3V6T2 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC88AQ3V6T2 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
CCDC88AQ3V6T2 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC21.8■■□□□ 1.08
CCDC88AQ3V6T2 AC006504.4-201ENST00000592118 1568 ntBASIC21.8■■□□□ 1.08
CCDC88AQ3V6T2 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC88AQ3V6T2 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC88AQ3V6T2 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC21.8■■□□□ 1.08
CCDC88AQ3V6T2 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC88AQ3V6T2 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC21.8■■□□□ 1.08
CCDC88AQ3V6T2 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC88AQ3V6T2 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
CCDC88AQ3V6T2 CBR1-202ENST00000399191 838 ntTSL 3 BASIC21.8■■□□□ 1.08
CCDC88AQ3V6T2 RIN3-211ENST00000557762 517 ntTSL 3 BASIC21.8■■□□□ 1.08
CCDC88AQ3V6T2 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC21.8■■□□□ 1.08
CCDC88AQ3V6T2 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC21.8■■□□□ 1.08
CCDC88AQ3V6T2 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC88AQ3V6T2 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC21.8■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms