Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 PMS2P2-201ENST00000425039 1128 ntBASIC20.37■□□□□ 0.85
CCNA1P78396 AC108751.1-201ENST00000490852 363 ntBASIC20.37■□□□□ 0.85
CCNA1P78396 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC20.37■□□□□ 0.85
CCNA1P78396 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC20.37■□□□□ 0.85
CCNA1P78396 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC20.37■□□□□ 0.85
CCNA1P78396 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC20.37■□□□□ 0.85
CCNA1P78396 AC064836.3-201ENST00000607928 673 ntBASIC20.37■□□□□ 0.85
CCNA1P78396 AL589182.2-201ENST00000619332 1049 ntBASIC20.37■□□□□ 0.85
CCNA1P78396 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
CCNA1P78396 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CCNA1P78396 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC20.37■□□□□ 0.85
CCNA1P78396 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CCNA1P78396 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CCNA1P78396 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC20.36■□□□□ 0.85
CCNA1P78396 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CCNA1P78396 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CCNA1P78396 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CCNA1P78396 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CCNA1P78396 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CCNA1P78396 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
CCNA1P78396 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC20.36■□□□□ 0.85
CCNA1P78396 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC20.36■□□□□ 0.85
CCNA1P78396 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
CCNA1P78396 AC023274.1-201ENST00000418278 595 ntBASIC20.36■□□□□ 0.85
CCNA1P78396 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC20.36■□□□□ 0.85
CCNA1P78396 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC20.36■□□□□ 0.85
CCNA1P78396 AC073592.5-201ENST00000624854 528 ntBASIC20.36■□□□□ 0.85
CCNA1P78396 AC134684.3-201ENST00000641758 218 ntBASIC20.36■□□□□ 0.85
CCNA1P78396 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC20.36■□□□□ 0.85
CCNA1P78396 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC20.36■□□□□ 0.85
CCNA1P78396 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CCNA1P78396 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC20.36■□□□□ 0.85
CCNA1P78396 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
CCNA1P78396 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CCNA1P78396 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CCNA1P78396 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC20.36■□□□□ 0.85
CCNA1P78396 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC20.35■□□□□ 0.85
CCNA1P78396 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CCNA1P78396 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
CCNA1P78396 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC20.35■□□□□ 0.85
CCNA1P78396 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CCNA1P78396 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC20.35■□□□□ 0.85
CCNA1P78396 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC20.35■□□□□ 0.85
CCNA1P78396 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CCNA1P78396 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CCNA1P78396 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC20.35■□□□□ 0.85
CCNA1P78396 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC20.35■□□□□ 0.85
CCNA1P78396 PON3-205ENST00000451904 1053 ntTSL 3 BASIC20.35■□□□□ 0.85
CCNA1P78396 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CCNA1P78396 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC20.35■□□□□ 0.85
CCNA1P78396 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC20.35■□□□□ 0.85
CCNA1P78396 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC20.35■□□□□ 0.85
CCNA1P78396 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC20.35■□□□□ 0.85
CCNA1P78396 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC20.35■□□□□ 0.85
CCNA1P78396 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC20.35■□□□□ 0.85
CCNA1P78396 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC20.35■□□□□ 0.85
CCNA1P78396 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CCNA1P78396 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC20.35■□□□□ 0.85
CCNA1P78396 AC116562.4-201ENST00000641316 2276 ntBASIC20.35■□□□□ 0.85
CCNA1P78396 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
CCNA1P78396 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
CCNA1P78396 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CCNA1P78396 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC20.35■□□□□ 0.85
CCNA1P78396 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
CCNA1P78396 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CCNA1P78396 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CCNA1P78396 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CCNA1P78396 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CCNA1P78396 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CCNA1P78396 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
CCNA1P78396 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC20.34■□□□□ 0.85
CCNA1P78396 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CCNA1P78396 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
CCNA1P78396 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CCNA1P78396 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC20.34■□□□□ 0.85
CCNA1P78396 COX5BP2-201ENST00000392354 334 ntBASIC20.34■□□□□ 0.85
CCNA1P78396 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC20.34■□□□□ 0.85
CCNA1P78396 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC20.34■□□□□ 0.85
CCNA1P78396 NKTR-203ENST00000442970 646 ntTSL 2 BASIC20.34■□□□□ 0.85
CCNA1P78396 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC20.34■□□□□ 0.85
CCNA1P78396 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC20.34■□□□□ 0.85
CCNA1P78396 AC004817.3-201ENST00000602957 2129 ntBASIC20.34■□□□□ 0.85
CCNA1P78396 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
CCNA1P78396 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CCNA1P78396 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC20.34■□□□□ 0.85
CCNA1P78396 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC20.34■□□□□ 0.85
CCNA1P78396 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CCNA1P78396 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
CCNA1P78396 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
CCNA1P78396 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
CCNA1P78396 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC20.33■□□□□ 0.85
CCNA1P78396 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC20.33■□□□□ 0.85
CCNA1P78396 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CCNA1P78396 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC20.33■□□□□ 0.85
CCNA1P78396 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
CCNA1P78396 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CCNA1P78396 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CCNA1P78396 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC20.33■□□□□ 0.85
CCNA1P78396 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC20.33■□□□□ 0.85
CCNA1P78396 AL020989.1-201ENST00000422979 469 ntBASIC20.33■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms