Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 MIR3687-1-201ENST00000614492 61 ntBASIC15.42■□□□□ 0.06
ABCA4P78363 FAM197Y3-203ENST00000618346 717 ntBASIC15.42■□□□□ 0.06
ABCA4P78363 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC15.42■□□□□ 0.06
ABCA4P78363 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
ABCA4P78363 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
ABCA4P78363 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
ABCA4P78363 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC15.42■□□□□ 0.06
ABCA4P78363 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
ABCA4P78363 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
ABCA4P78363 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC15.42■□□□□ 0.06
ABCA4P78363 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC15.42■□□□□ 0.06
ABCA4P78363 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
ABCA4P78363 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
ABCA4P78363 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC15.42■□□□□ 0.06
ABCA4P78363 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
ABCA4P78363 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC15.42■□□□□ 0.06
ABCA4P78363 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
ABCA4P78363 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
ABCA4P78363 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC15.42■□□□□ 0.06
ABCA4P78363 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
ABCA4P78363 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
ABCA4P78363 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
ABCA4P78363 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
ABCA4P78363 GPX1P2-201ENST00000429271 606 ntBASIC15.42■□□□□ 0.06
ABCA4P78363 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC15.42■□□□□ 0.06
ABCA4P78363 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC15.42■□□□□ 0.06
ABCA4P78363 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC15.42■□□□□ 0.06
ABCA4P78363 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC15.42■□□□□ 0.06
ABCA4P78363 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC15.42■□□□□ 0.06
ABCA4P78363 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC15.42■□□□□ 0.06
ABCA4P78363 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
ABCA4P78363 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC15.42■□□□□ 0.06
ABCA4P78363 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
ABCA4P78363 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
ABCA4P78363 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
ABCA4P78363 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC15.42■□□□□ 0.06
ABCA4P78363 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
ABCA4P78363 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
ABCA4P78363 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
ABCA4P78363 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
ABCA4P78363 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
ABCA4P78363 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC15.41■□□□□ 0.06
ABCA4P78363 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
ABCA4P78363 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
ABCA4P78363 URGCP-206ENST00000446958 365 ntTSL 2 BASIC15.41■□□□□ 0.06
ABCA4P78363 RBSN-204ENST00000449050 903 ntTSL 2 BASIC15.41■□□□□ 0.06
ABCA4P78363 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC15.41■□□□□ 0.06
ABCA4P78363 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC15.41■□□□□ 0.06
ABCA4P78363 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC15.41■□□□□ 0.06
ABCA4P78363 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC15.41■□□□□ 0.06
ABCA4P78363 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC15.41■□□□□ 0.06
ABCA4P78363 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC15.41■□□□□ 0.06
ABCA4P78363 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
ABCA4P78363 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
ABCA4P78363 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC15.41■□□□□ 0.06
ABCA4P78363 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
ABCA4P78363 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC15.41■□□□□ 0.06
ABCA4P78363 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC15.41■□□□□ 0.06
ABCA4P78363 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC15.41■□□□□ 0.06
ABCA4P78363 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC15.41■□□□□ 0.06
ABCA4P78363 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC15.41■□□□□ 0.06
ABCA4P78363 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC15.41■□□□□ 0.06
ABCA4P78363 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
ABCA4P78363 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
ABCA4P78363 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
ABCA4P78363 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
ABCA4P78363 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
ABCA4P78363 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC15.41■□□□□ 0.06
ABCA4P78363 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
ABCA4P78363 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC15.41■□□□□ 0.06
ABCA4P78363 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
ABCA4P78363 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
ABCA4P78363 AC025062.2-201ENST00000605477 670 ntBASIC15.41■□□□□ 0.06
ABCA4P78363 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC15.41■□□□□ 0.06
ABCA4P78363 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
ABCA4P78363 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
ABCA4P78363 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
ABCA4P78363 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC15.41■□□□□ 0.06
ABCA4P78363 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
ABCA4P78363 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC15.4■□□□□ 0.06
ABCA4P78363 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
ABCA4P78363 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
ABCA4P78363 TBC1D3P5-201ENST00000579401 1545 ntBASIC15.4■□□□□ 0.06
ABCA4P78363 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
ABCA4P78363 SLC25A24-204ENST00000569674 2357 ntBASIC15.4■□□□□ 0.06
ABCA4P78363 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
ABCA4P78363 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
ABCA4P78363 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC15.4■□□□□ 0.06
ABCA4P78363 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC15.4■□□□□ 0.06
ABCA4P78363 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
ABCA4P78363 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC15.4■□□□□ 0.06
ABCA4P78363 AC112698.1-201ENST00000510299 916 ntBASIC15.4■□□□□ 0.06
ABCA4P78363 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC15.4■□□□□ 0.06
ABCA4P78363 AC002347.1-201ENST00000569543 541 ntBASIC15.4■□□□□ 0.06
ABCA4P78363 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC15.4■□□□□ 0.06
ABCA4P78363 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC15.4■□□□□ 0.06
ABCA4P78363 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
ABCA4P78363 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
ABCA4P78363 AC009102.3-201ENST00000623118 1491 ntBASIC15.4■□□□□ 0.06
ABCA4P78363 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms